Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_A01_e481_01.seq
         (1499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52410.2 68418.m06502 expressed protein                             30   4.5  
At5g52410.1 68418.m06503 expressed protein                             30   4.5  

>At5g52410.2 68418.m06502 expressed protein
          Length = 761

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 193 EDEGK--LELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKY 342
           EDE +  L L + + +E++A    +   K E    RE A+  EEARG+ +KY
Sbjct: 572 EDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 623


>At5g52410.1 68418.m06503 expressed protein
          Length = 510

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 193 EDEGK--LELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKY 342
           EDE +  L L + + +E++A    +   K E    RE A+  EEARG+ +KY
Sbjct: 321 EDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,016,975
Number of Sequences: 28952
Number of extensions: 291678
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4000015680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)