Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H12_e384_16.seq
         (1495 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)              29   7.2  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
          Length = 376

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 1390 GXXXPKXGXXPKGPXGPXGXQXPP 1319
            G   PK    P GP GP G Q PP
Sbjct: 254  GPPGPKGDTGPAGPGGPRGNQGPP 277


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 24/88 (27%), Positives = 25/88 (28%)
 Frame = +3

Query: 1176 PGXXXXGXPLXXGXXSPPPSXXPXGXEXXIXXPEXXNLXXARXPXKTXGGXXXPXGPXGP 1355
            PG          G   PPP   P G       P   +      P     G   P  P  P
Sbjct: 904  PGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPP----GGNAPPPPPPP 959

Query: 1356 LGXXPXLGXXXPXLXXPXXKXXXXPPPP 1439
             G  P  G   P L  P       PPPP
Sbjct: 960  GGSAPPPGGGAPPLPPPPGGSAPPPPPP 987


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -3

Query: 635 HTYTQAHTHTYIHVNIVL*LVFKY**IHFWLFTLCVGLVYISILY 501
           +TYT  +T+TY++V + +  V+ Y  ++ +++      +Y SI Y
Sbjct: 44  YTYTYTYTYTYVYVYVYV-YVYVYVYVYVYVYVYIYIYLYDSIAY 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,266,913
Number of Sequences: 59808
Number of extensions: 526670
Number of successful extensions: 2608
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2583
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4835964124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)