Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H12_e384_16.seq
         (1495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical ...    30   3.7  

>AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical
           protein C03H5.2 protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +2

Query: 695 LVSKTVYRYIFISYILLKALFILVXFKSDCLGGVVVLRXHXRYEISDSILGSGQVILGFF 874
           ++ K+++RY +++ ILL A   LV + S              ++ SD+ILG G V+   F
Sbjct: 140 MLGKSLHRYNWMALILLTAGVALVQYPSG--DSTTSKSTAAEHDASDNILGLGAVLAACF 197

Query: 875 YS 880
            S
Sbjct: 198 SS 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,454,831
Number of Sequences: 27780
Number of extensions: 443858
Number of successful extensions: 1191
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4297958014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)