Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H09_e360_15.seq
         (1466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   1.6  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    29   1.6  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    28   3.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   6.5  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    27   8.6  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 27/100 (27%), Positives = 43/100 (43%)
 Frame = -3

Query: 666 ADNVAFVILLCDESFSSFCDKIHKFTAKLCTDSCPRSPRRMTRQNNSIDKLYCFCVSLLP 487
           +DN+AFV +  ++ +        + ++ LCT  CP     M             C   L 
Sbjct: 66  SDNIAFVAIRNNQCYCGSTLTATEVSSSLCTTPCPGYGSLM-------------CGGDLY 112

Query: 486 SNVFKTTNNS*HTPVAYFSIASINSSSDPYSLSLDNTEST 367
            +V+ T N    T V+  S++S  SSS   S S  +T +T
Sbjct: 113 WSVYLTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTT 152


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 359 VYHVDSVLSNDKLYGSDEEFIDAIEKYATGVCQELLVVLKTLDGNKETQKQYNL 520
           +++  S+L    +Y  D+E ++A EK+ T   Q  L   K L+ NK   + Y+L
Sbjct: 630 LHNTSSLLPGLVIYEEDDEDVEAAEKFYTNDIQRDL-AKKALECNKLENRVYDL 682


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 320 VLDILNEMAQENYVYHVDSVLSNDKLYGSDEEFIDAIEK-YATGVCQELLVVLKTLDGNK 496
           V DILN  ++  +   V  +L + K+   ++EF D +++    G   E +V  K  D +K
Sbjct: 42  VADILNATSKSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGVGYGNEFIV--KPTDLDK 99

Query: 497 ETQKQYNLSME 529
           + +K + L ++
Sbjct: 100 DFEKNHFLDLK 110


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 290 EPLYYTTLLRVLDILNEMAQENYVYHVDSVLSND 391
           EP +Y   L++ DILN+ +    V H+D + S D
Sbjct: 163 EP-HYADKLQMSDILNDDSNPKLVVHLDRIRSQD 195


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 572 SVHNLAVNLWILSQKLLKDSSHNNITKATLSALQNDDRPTSQRLLQKL 715
           S ++  + LW L +K LK  + NN++ +  S +Q      SQ  L +L
Sbjct: 109 STNDKTIKLWKLYEKNLKVVAENNLSDSFHSPMQGPLTTPSQLRLPRL 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,411,363
Number of Sequences: 5004
Number of extensions: 78991
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 816655688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)