Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H09_e360_15.seq
         (1466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552     31   3.0  
12_02_0717 + 22481418-22482692,22482895-22482915                       30   5.3  
01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365           29   7.0  

>07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552
          Length = 306

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 719 PLVFVIIAG-WSVYRRFVMPTMSLLLYCYATSLSVVFAIKSTSSRLNYAQTPAPGPHVV 546
           PLV V   G WS+YR  +   ++ LL+ Y T  +V+     T + +N A     G  V+
Sbjct: 25  PLVDVDELGKWSLYRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVL 83


>12_02_0717 + 22481418-22482692,22482895-22482915
          Length = 431

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 52  PGLQAARGAXWLQRACAAYCFVTVPSLHCA--LTKAHLYLLS-GQVALLNNC 198
           P  +AAR    + RA  +YC   +P L  A  L  A +YL S G+   L +C
Sbjct: 111 PAARAARQDAAVARAAGSYCRYAIPDLAAASVLLPARVYLRSKGETRRLASC 162


>01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365
          Length = 550

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = -1

Query: 755 TNKRNFMRSLRFPLVFVIIAGWSVYRRFVMPTMSLLLYCYATSLSVVFAIKSTSSRLNYA 576
           +N R F  SL   L FV +A  SVY    +PT + LL     +  VV  ++S ++     
Sbjct: 254 SNARFFRLSLSGGLRFVHVASDSVYLARPVPTRAFLLAPSEIADVVVDFVESGNATAIVL 313

Query: 575 QTPAPGPH 552
           ++ AP P+
Sbjct: 314 RSDAPAPY 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,788,010
Number of Sequences: 37544
Number of extensions: 605412
Number of successful extensions: 1215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4675649524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)