Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H09_e360_15.seq
         (1466 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)                 74   3e-13
SB_42884| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.3  
SB_47315| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.3  
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)                29   7.1  
SB_19001| Best HMM Match : MBOAT (HMM E-Value=2.2)                     29   9.4  

>SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)
          Length = 638

 Score = 74.1 bits (174), Expect = 3e-13
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
 Frame = +2

Query: 197 ALDKDNVDSNCKCYIMSGFIKTMERIHWDKTEPLYYTTLLRVLDILNEMAQENYVYHVDS 376
           A  +DN ++    Y++ G +  +    W+       +  L  + +L+ M Q+ Y+YH+D 
Sbjct: 448 ATHQDNPETGV-LYLVRGLLDVVTDFSWELNSDAKMSLYLNAICLLSAMCQDTYLYHIDK 506

Query: 377 VLSNDKLYGSDEEFIDAIEKYATGVCQELLVVLKTLDGN---------KETQKQYNLSME 529
           V SNDKLYG D++FI  + K    + + +   LKTL            +  ++Q  +++ 
Sbjct: 507 VDSNDKLYGGDKKFIAEVCKTVATLTEAIFEHLKTLTSGEVLLYLHHFQGLKRQAAIALG 566

Query: 530 LFWRVIRRGDLGQESVHNLAVNLWILSQK 616
            F R+I   DL    +  LA NLW L+QK
Sbjct: 567 FFNRLICHADLTNPELMTLAQNLWNLAQK 595



 Score = 56.4 bits (130), Expect = 5e-08
 Identities = 24/39 (61%), Positives = 28/39 (71%)
 Frame = +1

Query: 91  RACAAYCFVTVPSLHCALTKAHLYLLSGQVALLNNCIGQ 207
           RACAAYCF+T+PS+    TK  LYL SGQVAL N  + Q
Sbjct: 357 RACAAYCFITIPSIEDIFTKLQLYLYSGQVALANQALSQ 395


>SB_42884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 2  SWXXPAVAAALXTSGXPPGCRRHEGQXGYS 91
          +W   AVAAAL     PPGCR   GQ G++
Sbjct: 3  NWSSTAVAAALELVD-PPGCRNSIGQNGFT 31


>SB_47315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -1

Query: 152 ALVRAQCREGTVTKQ*AAHARCNHXAPRAACSPGXXH*XLERPPPR 15
           AL  ++   G V ++     R  H  P  +CSPG     LERPPPR
Sbjct: 37  ALYLSKMTRGKVLERLDKKLRNKHTNPSNSCSPGDPL-VLERPPPR 81


>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
          Length = 520

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 704 IIAGWSVYRRFVMPTMSLLLYCYATSLSVVFAIKSTSS 591
           +   WS  +  ++ T S+LL+C    L VV+A++ + S
Sbjct: 479 LFTNWSEIKVDILTTESILLHCLDALLKVVYALEESMS 516


>SB_19001| Best HMM Match : MBOAT (HMM E-Value=2.2)
          Length = 596

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 710 FVIIAGWSVYRRFVMPTMSLLLYCYATSLSVVFAIKSTSSRL 585
           F++ A + V RR  +P+  L++Y Y   L  +   +STSS +
Sbjct: 398 FIVYANFGVLRRLRLPSEYLIVYAYLKVLHRLRLPQSTSSSM 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,576,700
Number of Sequences: 59808
Number of extensions: 648704
Number of successful extensions: 1995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1993
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4730324131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)