Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H09_e360_15.seq
         (1466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related...    32   1.2  
AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related ...    32   1.2  
Z74030-19|CAA98449.2|  841|Caenorhabditis elegans Hypothetical p...    29   6.3  
Z72508-10|CAA96644.2|  841|Caenorhabditis elegans Hypothetical p...    29   6.3  
U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical pr...    29   8.3  

>AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           b protein.
          Length = 548

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +2

Query: 443 TGVCQELLVVLKTLD--GNKETQKQYNLSMELFWRVI 547
           T V +E++  L+ L+  GN+E Q++YN    +FW++I
Sbjct: 247 TKVVEEMMNELEVLEEYGNREDQEKYNRLATVFWKII 283


>AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           a protein.
          Length = 660

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +2

Query: 443 TGVCQELLVVLKTLD--GNKETQKQYNLSMELFWRVI 547
           T V +E++  L+ L+  GN+E Q++YN    +FW++I
Sbjct: 247 TKVVEEMMNELEVLEEYGNREDQEKYNRLATVFWKII 283


>Z74030-19|CAA98449.2|  841|Caenorhabditis elegans Hypothetical
           protein F28H7.10a protein.
          Length = 841

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 404 SDEEFIDAIEKYATGVCQELLVVLKTLDGNKETQKQYNLSMELFWRVIRRGDLGQ 568
           S    +D  ++    +  +L   LK LDG  +  K  +   E+ W V  RG +G+
Sbjct: 107 SGPNILDEFDQGQAEMAGDLKKALKLLDGGGKGGKSESKYREMVWSVDERGSMGE 161


>Z72508-10|CAA96644.2|  841|Caenorhabditis elegans Hypothetical
           protein F28H7.10a protein.
          Length = 841

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 404 SDEEFIDAIEKYATGVCQELLVVLKTLDGNKETQKQYNLSMELFWRVIRRGDLGQ 568
           S    +D  ++    +  +L   LK LDG  +  K  +   E+ W V  RG +G+
Sbjct: 107 SGPNILDEFDQGQAEMAGDLKKALKLLDGGGKGGKSESKYREMVWSVDERGSMGE 161


>U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical
           protein F08D12.7 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = -3

Query: 738 YAFFTLSFSFCNNRWLVGLSSFCNADNVAFVILLCDESFSSFCDKIHKFTAKLCTDSCPR 559
           + FF +    C+   +  LSS  N DN+  V+      F   C+++H    KL  ++   
Sbjct: 141 FCFFQVIGKECSEETVAILSSNFNYDNLINVLTTVPGGFQDNCNRLHHAFNKLQCEALES 200

Query: 558 SPRRMTRQNNSID 520
                 R+ N +D
Sbjct: 201 GIVAKEREINWVD 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,618,473
Number of Sequences: 27780
Number of extensions: 497916
Number of successful extensions: 1235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4204297912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)