Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H09_e360_15.seq
         (1466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   3.8  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   5.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   5.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   8.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 307 DPITCSRYFK*NGTGKLCLS 366
           D ++  RYF  NGT K+ LS
Sbjct: 370 DQVSVGRYFYPNGTEKMTLS 389


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 748 LFVISAFLIYXNSFINILIN 807
           LF + +FLI  +S+I IL+N
Sbjct: 65  LFSVFSFLILVSSYIVILVN 84


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 751 FVISAFLIYXNSFINILI 804
           F+++++L Y NSF+N +I
Sbjct: 659 FIVTSWLGYMNSFVNPVI 676


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = -3

Query: 1353 GGLXPXXXXXPXPPXPXXXPXXGXP 1279
            GG  P     P PP P      G P
Sbjct: 406  GGQLPPSAGAPMPPIPNMSNMSGMP 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 328,271
Number of Sequences: 438
Number of extensions: 6727
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51079875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)