Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H09_e360_15.seq
         (1466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50730.1 68414.m05705 expressed protein                             34   0.27 
At5g12130.1 68418.m01424 integral membrane TerC family protein c...    31   1.4  
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    31   1.9  
At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase...    29   5.8  
At3g54820.1 68416.m06068 aquaporin, putative similar to plasma m...    29   7.7  

>At1g50730.1 68414.m05705 expressed protein
          Length = 1013

 Score = 33.9 bits (74), Expect = 0.27
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 28  RSXN*WXXPGLQAARGAXWLQRACAAYCFVTVPSLHCALTKAHLYLLSGQVALLNNCI 201
           RS N      L+A +      ++C A+  VT+PS+       +LYL + +VALL   I
Sbjct: 666 RSSNTLAVKALKAGKKHINFVKSCLAFSEVTIPSISSPTKHLNLYLETAEVALLGGLI 723


>At5g12130.1 68418.m01424 integral membrane TerC family protein
           contains Pfam profile PF03741: Integral membrane protein
           TerC family
          Length = 384

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +2

Query: 302 YTTLLRVLDILNEMAQENYVYHVDSVLSNDKLYGSDEEFIDAIEKYATGVCQELLVVLKT 481
           +T +L     L +    N +     + S+ KL+ S+E+  D  + +    CQ  + V  +
Sbjct: 194 FTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSS 253

Query: 482 LDGNK 496
            DGN+
Sbjct: 254 YDGNR 258


>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor, Homo
            sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1793

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 389  DKLYGSDEEFIDAIEKYATGVCQELL-VVLKTLDGNKETQKQYNLSMELFWRV 544
            DK    +EE  + IE     +CQE+L   ++T    K+ Q + + + E  WR+
Sbjct: 1665 DKTKKEEEEEEEEIESLLVNICQEVLNFYIETSSSAKKLQSESSRASEYRWRI 1717


>At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 4 [Lycopersicon
           esculentum] GI:2459815; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 394

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -3

Query: 726 TLSFSFCNNRWLVGLSSFCNADNV 655
           ++SFS+CNN  L GLSSF N+ N+
Sbjct: 150 SISFSWCNNVLLSGLSSF-NSQNM 172


>At3g54820.1 68416.m06068 aquaporin, putative similar to plasma
           membrane aquaporin GI:3551133 from [Raphanus sativus]
          Length = 286

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 692 WSVYRRFVMPTMSLLLYCYATSLSVVFAIKSTSSRLNYAQTPAPG 558
           WS YR  +   ++ LL+ Y T ++V+     T   LN  Q    G
Sbjct: 34  WSFYRALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVG 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,981,395
Number of Sequences: 28952
Number of extensions: 448893
Number of successful extensions: 920
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3893991168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)