Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H08_e352_16.seq
         (1512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1037 - 22477358-22478752                                         32   1.4  
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435...    32   1.4  
04_04_1275 + 32321161-32321285,32321849-32322071,32322187-323223...    30   4.2  
11_01_0175 - 1398728-1399558                                           30   5.5  
02_05_0029 - 25194827-25195095,25195129-25197970                       30   5.5  
08_02_0352 + 16146025-16146642                                         29   7.3  
05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690           29   9.6  
03_06_0416 - 33780911-33781861                                         29   9.6  

>10_08_1037 - 22477358-22478752
          Length = 464

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 153 PPIHSNGRRPSAHAQTDAAPRF-TPTGRRPPVHSSTGGVPYYTTNVSVYRGPLP 311
           PP H   + PS   Q    P   TP  R PPVH+    +P    N + +R P P
Sbjct: 256 PPQHQQPKPPSMRLQKIRPPPISTPVARPPPVHNHQ--IPNPNHNPAFHRPPPP 307


>04_04_1354 - 32841778-32841983,32842079-32843093,32843184-32843518,
            32843590-32844019,32844155-32844214,32844531-32844651,
            32845321-32846132
          Length = 992

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +3

Query: 69   RHEAP--PSHTRYERRVRGPLSHTVVRDRRPPIHSNGRRPSAHAQTDAAPRFTPTGRRPP 242
            RH  P  P+   + RR   P +   +   RPP H+N      HA     P FTP   RPP
Sbjct: 872  RHPPPVLPNQGFFPRRCP-PFAGQDLYPWRPPFHANQGPFPRHAPPHPCPPFTPGHVRPP 930

Query: 243  VHSSTGG 263
             + +  G
Sbjct: 931  SNFAPPG 937


>04_04_1275 +
           32321161-32321285,32321849-32322071,32322187-32322309,
           32322391-32322519,32322939-32323024,32323233-32323356,
           32323531-32323579,32323808-32323890,32323975-32324042,
           32324187-32324264,32324460-32324547,32324640-32324756,
           32324844-32325176
          Length = 541

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 88  HTHATNDACAAPCHIPWFETAAPQYTPTGGAPQLTLKQTP 207
           HT+ TN +C+ PC  P  +   P Y     + Q+ + Q P
Sbjct: 46  HTNGTNGSCSKPCE-PLTDYCIPDYILNPDSEQVLVDQAP 84


>11_01_0175 - 1398728-1399558
          Length = 276

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 83  PLTHTLRTTRARPL-VTYRGSRPPPPNT 163
           PL H    T   PL  ++RG+RPP P T
Sbjct: 19  PLEHAAAATETTPLHPSFRGARPPSPGT 46


>02_05_0029 - 25194827-25195095,25195129-25197970
          Length = 1036

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 225 TGRRPPVHSSTGGVPYYTTNVSVYRGPLPNTNS 323
           +G  P V  S G + Y++   +++RGPLP++ S
Sbjct: 284 SGYLPNVFGSLGKLEYFSAQSNLFRGPLPSSLS 316


>08_02_0352 + 16146025-16146642
          Length = 205

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 147 RRPPIHSNGRRPSAHAQTDAAPRFTPTGRRPPVHSSTGGV 266
           RRP   S+GR  +A    DA PR   + R  PV    GGV
Sbjct: 42  RRPDPASDGREAAASGGPDADPRPLISWRPDPVGGGGGGV 81


>05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690
          Length = 411

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 114 RGPLSHTVVRDRRPPIHSNGRRPSAHAQTDAAPRFTPTGRRPPVHSS--TGGVPYY 275
           RGP+       RR P+ + GRR    A     P F P GRR PV ++   GG P +
Sbjct: 118 RGPV---FAAGRRGPLFAAGRRGPVFAAGRGGPVFAP-GRRGPVFAAGFHGGGPVF 169


>03_06_0416 - 33780911-33781861
          Length = 316

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +1

Query: 100 TNDACAAPC--HIPWFETAAPQYTPTGGAPQLTLKQTPLLGSLQRAGAPQFTLQR 258
           T   CA P   H P    A P  TP    P++TL+Q       ++  AP    +R
Sbjct: 36  TTPQCAIPASPHTPGRGRAPPPATPRAPRPEITLRQPSSQAQQKQKRAPSAAARR 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,824,985
Number of Sequences: 37544
Number of extensions: 644748
Number of successful extensions: 1727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1722
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4849681144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)