Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H08_e352_16.seq
         (1512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 36   0.064
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.0  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.2  
SB_8589| Best HMM Match : DUF164 (HMM E-Value=0.29)                    30   4.2  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.2  
SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)                 30   5.6  
SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.6  
SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.6  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   7.4  

>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 36.3 bits (80), Expect = 0.064
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 69  RHEAPPSHTRYERRVRGPLSHTVVRDRRPPIHSNGRRPSAHAQTDAAPR-FTPTGRRPPV 245
           RH+ PP    Y+R  R P       D R     + RR   + + D  PR + P   RPP+
Sbjct: 239 RHDLPPPRDPYDRERRDPYERDPYYDHRDDPRDDPRRDDPYRRYDDYPRDYPPDDYRPPL 298


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 153 PPIHSNGRRPSAHAQTDAAPRFTPTGRRPPVHSS-TGGVPYYTTNVSVYRG 302
           P  H +  RP  HA +  AP   PT R PP H S     PY+ T+     G
Sbjct: 465 PTPHHSSDRPH-HATSYNAPSGMPTHREPPPHPSFASHQPYHVTSCDALSG 514


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
 Frame = +1

Query: 49  PPGCRXFGTRLPPHTHATNDACAAPC---HIPWFETAAPQYTPTGGAPQLTLKQTPLLGS 219
           PP  R F  R PP T     +  +P    H P       QY P G +P +   +    G 
Sbjct: 455 PPQTRPFDNRAPPPTQGYGPSGPSPWNMQHPPQHRAPPGQYPPLGASPPVQHGRGHATGR 514

Query: 220 LQRAGAP 240
            + AG P
Sbjct: 515 GEFAGPP 521


>SB_8589| Best HMM Match : DUF164 (HMM E-Value=0.29)
          Length = 306

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 153 PPIHSNGRRPSAHAQTDAAPRFTPTGRRPPVHSSTG 260
           P +H NG RPSAH +T   P  + + +     +S G
Sbjct: 2   PQVHMNGGRPSAHRKTSKQPSTSNSPKNIAAKTSYG 37


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 153 PPIHSNGRRPSAHAQTDAAPRFTPTGRRPPVHSSTG 260
           P +H NG RPSAH +T   P  + + +     +S G
Sbjct: 2   PQVHMNGGRPSAHRKTSKQPSTSNSPKNIAAKTSYG 37


>SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)
          Length = 288

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +2

Query: 68  SARGSPLTHTLRTTRARPLVTYRGSRPPPPNTLQRAAP 181
           S   S +T  L     RPLVT   S PP   T Q AAP
Sbjct: 24  SFTSSVVTSPLTVNLCRPLVTIATSCPPVTTTAQAAAP 61


>SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +2

Query: 68  SARGSPLTHTLRTTRARPLVTYRGSRPPPPNTLQRAAP 181
           S   S +T  L     RPLVT   S PP   T Q AAP
Sbjct: 24  SFTSSVVTSPLTVNLCRPLVTIATSCPPVTTTAQAAAP 61


>SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 84  PSHTRYERRVRGPLSHT-VVRDRRPPIHSNGRRPSAHAQTDAAPRFTPTGRRPPVHSSTG 260
           PS  R  RR +G   H  + + +  P+H N       +  D +PR +P   RP    + G
Sbjct: 491 PSAVRRNRRSKG--GHLPLTKAKSTPMHLNQIFEERESDMDESPRSSPRLERPHRRHAGG 548

Query: 261 GVPYYTTNVSVYRGPLPNTNS 323
           G      N      P+P+T S
Sbjct: 549 GAIKAKRNTR-RLSPVPSTGS 568


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +1

Query: 340 CAAVFYCYFFLLNNTYYILFQKPLSFFVSKWLECYFC 450
           C   +YCY++     YY  +     ++   +  CY+C
Sbjct: 482 CYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYCCYYC 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,759,126
Number of Sequences: 59808
Number of extensions: 679566
Number of successful extensions: 1307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4906390786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)