Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H08_e352_16.seq
         (1512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81583-2|CAB04670.1|  314|Caenorhabditis elegans Hypothetical pr...    29   6.5  
Z67734-2|CAA91528.2|  247|Caenorhabditis elegans Hypothetical pr...    29   8.6  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    29   8.6  

>Z81583-2|CAB04670.1|  314|Caenorhabditis elegans Hypothetical
           protein T02G6.2 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = +2

Query: 65  NSARGSPLT------HTLRTTRARPLVTYRGSRPPPPNTLQ 169
           NSA G  LT      HT+R+T   P+V     RP PP+ ++
Sbjct: 150 NSANGVSLTLPRVKNHTIRSTDTVPIVRVPAGRPRPPSKIE 190


>Z67734-2|CAA91528.2|  247|Caenorhabditis elegans Hypothetical
           protein B0198.2 protein.
          Length = 247

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +3

Query: 84  PSHTRYERRVRGPLSHTVVRDRRPPIHSNGRRPSAHAQTDAAPRFTPTGRRPP---VHS- 251
           P+ +RY   +R    + +  +  P  + +G  P++  Q +     +P G RPP   +HS 
Sbjct: 53  PAPSRYPEPLRPQTVNQMRIEHEPKCNGSGSSPASFVQYNNNNAQSPIGYRPPMQFIHSP 112

Query: 252 -STGGVP 269
            S  G+P
Sbjct: 113 VSENGIP 119


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
            protein Y80D3A.8 protein.
          Length = 1293

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 174  RRPSAHAQTDAAPRFTPTGRRPPVHSSTGGVPYYTTNVSVYRGPLPNTNSVF 329
            R P+   +   A +    G+R P+H++    P +     V +GPL NT   F
Sbjct: 1032 RYPTLPCKPSTAVKVIVNGQRVPIHANWVPTPGHPHRFIVTQGPLKNTRYDF 1083


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,882,940
Number of Sequences: 27780
Number of extensions: 506983
Number of successful extensions: 1146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4360398082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)