Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H08_e352_16.seq
         (1512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    32   1.1  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    32   1.1  
At5g35604.1 68418.m04242 hypothetical protein                          29   6.1  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    29   6.1  
At3g58720.1 68416.m06545 zinc finger (C3HC4-type RING finger) fa...    29   6.1  
At3g47330.1 68416.m05144 hypothetical protein contains Pfam prof...    29   6.1  
At1g69810.1 68414.m08032 WRKY family transcription factor              29   6.1  
At3g30230.1 68416.m03820 myosin heavy chain-related similar to M...    29   8.0  

>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
 Frame = +3

Query: 72  HEAPPSHTRYERRVRGPL---SHTVVRDRRPPIHSNGRRPSAHAQTDAAPRFTPTGRRPP 242
           H  PPSHT        P    S +      PP H+      +H  T   P  TPT   PP
Sbjct: 45  HGTPPSHTPPSSNCGSPPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPP 104

Query: 243 VH-SSTGGVPYYTTNVSVYRGPLPN 314
            +  S    P   ++ S    P P+
Sbjct: 105 CNCGSPPSHPSTPSHPSTPSHPTPS 129


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
 Frame = +3

Query: 72  HEAPPSHTRYERRVRGPL---SHTVVRDRRPPIHSNGRRPSAHAQTDAAPRFTPTGRRPP 242
           H  PPSHT        P    S +      PP H+      +H  T   P  TPT   PP
Sbjct: 45  HGTPPSHTPPSSNCGSPPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPP 104

Query: 243 VH-SSTGGVPYYTTNVSVYRGPLPN 314
            +  S    P   ++ S    P P+
Sbjct: 105 CNCGSPPSHPSTPSHPSTPSHPTPS 129


>At5g35604.1 68418.m04242 hypothetical protein
          Length = 298

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = +3

Query: 147 RRPPI-HSNGRRPSAHAQTDAAPRFTPTGRR----PPVHSS 254
           RRP   +S+ RR  A A+TD +PR +P  R     PPV +S
Sbjct: 72  RRPSRGNSSPRRDKARARTDCSPRLSPPSRTMGPPPPVATS 112


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 153 PPIHSNGRRPSAHAQTDAAPRFTPTGRRPPVHSSTGGVPYYTTNVSVYRGP 305
           PP+HS    P  H+    AP  +P    PPVHS     P Y+    V+  P
Sbjct: 584 PPVHSPP--PPVHSPPPPAPVHSPP---PPVHSPPPPPPVYSPPPPVFSPP 629


>At3g58720.1 68416.m06545 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 238

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 54  GLQXIRHEAPPSHTRYERRVRGP--LSHTVVRDRRPPIHSNGRRPSAHAQTDA 206
           GL  I+   PPSHTR++  +R    L    +   R  +H+   RP + +++ +
Sbjct: 34  GLGVIQDLVPPSHTRHQIPIRNSNNLRRQHLEALRQAVHNQSTRPESSSRSSS 86


>At3g47330.1 68416.m05144 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 664

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 62  GNSARGSPLTHTLRTTRARPLVTYRGSRPPPPNTLQ 169
           G++A   PL++  R T+++ LV + G R P P T++
Sbjct: 568 GSAADFVPLSYQPRDTQSKALVIHSGIRDPAPPTIE 603


>At1g69810.1 68414.m08032 WRKY family transcription factor
          Length = 387

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +2

Query: 83  PLTH-TLRTTRARPLVTYRGSRPPPPNTLQRAAPLXXXXXXXXXXVHSNGPAPPSS 247
           P  H ++ TT + P VT   +RP  PN L    PL            S  P PPSS
Sbjct: 301 PFHHFSISTTNSHPTVTLDLTRPNYPNQLPDDYPLSSSSFSLNFS--SPDPPPPSS 354


>At3g30230.1 68416.m03820 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 527

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +3

Query: 48  SPGLQXIRHEAPPSHTRYERRVRGPLSHTV--VRDRRPPIHSNGRRPSAHAQTDAAPRFT 221
           SP      H   P ++   R    P++  +   RDR    +S+ RR  + A+TD +PR +
Sbjct: 164 SPRRNLSPHRNSPRYSPRNRLSSKPVADLIRKKRDRSARGNSSPRREKSKARTDRSPRLS 223

Query: 222 --PTGRRPPVHSSTGGVP 269
             P    PP+   T   P
Sbjct: 224 LPPRSMGPPLPVVTSPPP 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,292,701
Number of Sequences: 28952
Number of extensions: 453803
Number of successful extensions: 1047
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)