Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H07_e344_15.seq
         (1463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   237   4e-63
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   237   4e-63
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   237   4e-63
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    41   4e-04
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    29   2.1  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  237 bits (579), Expect = 4e-63
 Identities = 108/158 (68%), Positives = 131/158 (82%)
 Frame = +2

Query: 128 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 307
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 308 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 487
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 488 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 601
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKK V
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVV 157



 Score =  167 bits (405), Expect = 4e-42
 Identities = 72/94 (76%), Positives = 85/94 (90%)
 Frame = +3

Query: 591 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 770
           KKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGG
Sbjct: 154 KKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGG 213

Query: 771 NHQHIGKASTVKRGTSAGRKVGLIAARXTGXIRG 872
           NHQH+G ++TV R ++ G+KVGLIAAR TG +RG
Sbjct: 214 NHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRG 247


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  237 bits (579), Expect = 4e-63
 Identities = 108/158 (68%), Positives = 131/158 (82%)
 Frame = +2

Query: 128 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 307
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 308 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 487
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 488 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 601
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKK V
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVV 157



 Score =  167 bits (405), Expect = 4e-42
 Identities = 72/94 (76%), Positives = 85/94 (90%)
 Frame = +3

Query: 591 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 770
           KKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGG
Sbjct: 154 KKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGG 213

Query: 771 NHQHIGKASTVKRGTSAGRKVGLIAARXTGXIRG 872
           NHQH+G ++TV R ++ G+KVGLIAAR TG +RG
Sbjct: 214 NHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRG 247


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  237 bits (579), Expect = 4e-63
 Identities = 108/158 (68%), Positives = 131/158 (82%)
 Frame = +2

Query: 128 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 307
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 308 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 487
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 488 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 601
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKK V
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVV 157



 Score =  167 bits (405), Expect = 4e-42
 Identities = 72/94 (76%), Positives = 85/94 (90%)
 Frame = +3

Query: 591 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 770
           KKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGG
Sbjct: 154 KKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGG 213

Query: 771 NHQHIGKASTVKRGTSAGRKVGLIAARXTGXIRG 872
           NHQH+G ++TV R ++ G+KVGLIAAR TG +RG
Sbjct: 214 NHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRG 247


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +3

Query: 717 PYVRGVAMNPVEHPHGGGNHQHIG 788
           P VRG AMNP +HPHGGG  + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = +3

Query: 585 VPKKVLPS-SNRGMVGIVAGGGR---IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 743
           V K V P  S      +VA G     ++KPI        K+K K +CW  +RG   N
Sbjct: 42  VKKYVAPGFSQLNWSKLVASGQNLSGVEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,530,802
Number of Sequences: 5004
Number of extensions: 90456
Number of successful extensions: 240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 814673514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)