Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_H07_e344_15.seq
(1463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 242 6e-64
06_01_0552 - 3935804-3936145,3936247-3936346,3936600-3936725,393... 32 1.3
02_02_0488 - 10863248-10863960,10865933-10866269 31 2.3
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 25 3.5
11_02_0150 - 8816714-8817806,8817993-8818126 29 7.0
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 29 7.0
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 7.0
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 242 bits (592), Expect = 6e-64
Identities = 108/158 (68%), Positives = 132/158 (83%)
Frame = +2
Query: 128 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 307
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 308 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 487
V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120
Query: 488 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 601
GDRG ARASG++A VI HNPD +R+KLPSGAKK V
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIV 158
Score = 163 bits (397), Expect = 2e-40
Identities = 72/94 (76%), Positives = 81/94 (86%)
Frame = +3
Query: 591 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 770
KK++PSS R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGG
Sbjct: 155 KKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGG 214
Query: 771 NHQHIGKASTVKRGTSAGRKVGLIAARXTGXIRG 872
NHQHIG ASTV+R G+KVGLIAAR TG +RG
Sbjct: 215 NHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRG 248
>06_01_0552 -
3935804-3936145,3936247-3936346,3936600-3936725,
3936802-3936991,3937105-3937338,3937640-3937788,
3937890-3938073,3938159-3938195,3938293-3938508
Length = 525
Score = 31.9 bits (69), Expect = 1.3
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -1
Query: 830 LATSRGSSLDSRSFTNMLMVTTTMRMLNGVHSNTTYIWPAVAFHFVFVISTPSLQDGLVN 651
L + G D+ FT ++ V T +LN V + + P V H + I PS DG+V+
Sbjct: 236 LVLAPGGFFDAGWFTEVI-VKTRPNLLNVVTHHIYNLGPGVDTHLIEKILNPSYLDGMVS 294
Query: 650 T 648
T
Sbjct: 295 T 295
>02_02_0488 - 10863248-10863960,10865933-10866269
Length = 349
Score = 31.1 bits (67), Expect = 2.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 646 PPPATIPTMPLLLDGNTFFGTRWKLYSR 563
PPP+T P + L T+ G WKLYSR
Sbjct: 234 PPPSTAPAVAAPL-APTYLGRPWKLYSR 260
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 25.4 bits (53), Expect(2) = 3.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 894 SFLGQSYXHGXFLXYAQQ*DQPCDQQRFLS*QSKLYQYVD--GYHHHEDAQ 748
S+L +Y H F + QQ Q +QQR + K+ +D HHH +
Sbjct: 700 SYLQNAYLHPIFHMFEQQQQQEQEQQR----EEKVEVRIDKAQQHHHRQVE 746
Score = 23.4 bits (48), Expect(2) = 3.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -3
Query: 771 YHHHEDAQRGS*QHHVH 721
YHHH + + HH H
Sbjct: 762 YHHHHEQTTTTTHHHYH 778
>11_02_0150 - 8816714-8817806,8817993-8818126
Length = 408
Score = 29.5 bits (63), Expect = 7.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 783 YVDGYHHHEDAQRGS*QHHVHMASSCVSLCIC 688
+ D YH D R + HVHM S C+ C
Sbjct: 69 HTDAYHGDPDNPRTEARQHVHMLSKCLPCYSC 100
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.5 bits (63), Expect = 7.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 578 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 459
E L V+ PD + W+ C RR ++ S +P +QL
Sbjct: 431 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 470
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.5 bits (63), Expect = 7.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 578 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 459
E L V+ PD + W+ C RR ++ S +P +QL
Sbjct: 441 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 480
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,402,464
Number of Sequences: 37544
Number of extensions: 708682
Number of successful extensions: 1815
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4664047416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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