Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H07_e344_15.seq
         (1463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             267   1e-71
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       197   2e-50
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    49   8e-06
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.3  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  267 bits (655), Expect = 1e-71
 Identities = 121/158 (76%), Positives = 137/158 (86%)
 Frame = +2

Query: 128 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 307
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 308 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 487
           V FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK 
Sbjct: 61  VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKT 120

Query: 488 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 601
           GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KK +
Sbjct: 121 GDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVI 158



 Score =  182 bits (442), Expect = 8e-46
 Identities = 81/96 (84%), Positives = 87/96 (90%)
 Frame = +3

Query: 591 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 770
           KKV+PSSNR +VGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGG
Sbjct: 155 KKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGG 214

Query: 771 NHQHIGKASTVKRGTSAGRKVGLIAARXTGXIRGGK 878
           NHQHIG  STV+R T AGRKVGLIAAR TG +RGG+
Sbjct: 215 NHQHIGHPSTVRRDTPAGRKVGLIAARRTGLLRGGQ 250


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  197 bits (481), Expect = 2e-50
 Identities = 87/116 (75%), Positives = 102/116 (87%)
 Frame = +2

Query: 254 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVM 433
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60

Query: 434 PVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 601
           PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KK +
Sbjct: 61  PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVI 116


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +2

Query: 248 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYC--GKK---AT 412
           IK  V  + +DP R A +A+V          +++L IAP+ +  G  +    GK    A 
Sbjct: 56  IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111

Query: 413 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 592
           L+ G+  P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS  +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169

Query: 593 KSVTIK 610
           K V+ K
Sbjct: 170 KEVSSK 175


>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 901 LGFFLGSVLPPRIXPVXRAAMRPTLRPAEVPLLTVEALPIC*WLPPP 761
           +G  L  VL P + P+ R  +RP LRP   P+L    L    W  PP
Sbjct: 405 VGLNLVGVLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,083,016
Number of Sequences: 59808
Number of extensions: 763706
Number of successful extensions: 2025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2015
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4718586354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)