Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H07_e344_15.seq
         (1463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   256   4e-68
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    36   0.072
U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop hel...    29   8.3  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  256 bits (626), Expect = 4e-68
 Identities = 111/158 (70%), Positives = 134/158 (84%)
 Frame = +2

Query: 128 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 307
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 308 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 487
           + FRDPYK+KT K   +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K 
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120

Query: 488 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 601
           GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKK V
Sbjct: 121 GDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVV 158



 Score =  170 bits (413), Expect = 2e-42
 Identities = 76/96 (79%), Positives = 83/96 (86%)
 Frame = +3

Query: 591 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 770
           KKV+ S NR M+G+VAGGGR DKP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGG
Sbjct: 155 KKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGG 214

Query: 771 NHQHIGKASTVKRGTSAGRKVGLIAARXTGXIRGGK 878
           NHQHIG  STV+R  SAG+KVGLIAAR TG IRGGK
Sbjct: 215 NHQHIGHPSTVRRDASAGKKVGLIAARRTGRIRGGK 250


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 35.9 bits (79), Expect = 0.072
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 422 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 580
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop helix
           protein 14 protein.
          Length = 246

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 540 PITVAKLPEARASRPRSPIFSSKLHTIVPSGIAPTGI 430
           PI+   +P  R SRP  P+  S +H++ P  +  T +
Sbjct: 47  PISTLLVPPIRLSRPAFPLTISLIHSVHPHSLLATTV 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,280,315
Number of Sequences: 27780
Number of extensions: 564448
Number of successful extensions: 1281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4193891234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)