Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H07_e344_15.seq
         (1463 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   6.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   6.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   6.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 560 VWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQLYLQA*HPQAL--HCQLLELLSCHSK 390
           +WRPDC    ++N ++    V  H   +PN+   YL   H + L    +L  +LSC  K
Sbjct: 87  IWRPDC---FFKNAKK----VTFHEMSIPNH---YLWLYHDKTLLYMSKLTLVLSCAMK 135


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 112 LGQDGRFRKNTYAXCRIXCSPGDXTSX*SG 23
           LG   +F  N Y    I C+    TS  SG
Sbjct: 301 LGSYNKFNNNVYKDALIVCTVNSCTSMLSG 330


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 112 LGQDGRFRKNTYAXCRIXCSPGDXTSX*SG 23
           LG   +F  N Y    I C+    TS  SG
Sbjct: 354 LGSYNKFNNNVYKDALIVCTVNSCTSMLSG 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 322,694
Number of Sequences: 438
Number of extensions: 7080
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 50960250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)