Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H06_e336_16.seq
         (1494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    28   3.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    27   5.0  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   8.8  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +1

Query: 553 LFKLKNIESIKMKFVYN----IEVEIICKQFE*NQLQDVKAISIISLFQVRQYWNQFY** 720
           L+    IES+K ++V N    +E+  +C  +  N L D K   +  + +    W +FY  
Sbjct: 252 LYAYPTIESLKSRWVKNGWEYVEILDVCTFW--NFLMDSKLKHLCEMVEPFDEWEEFYFF 309

Query: 721 IIRYTILKFRKRLV 762
           +  Y+I     +LV
Sbjct: 310 LQHYSIQHASSKLV 323


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 550 KLFKLKNIESIKMKFVYNIEVEIICKQFE*NQLQDVKAISIISLFQVRQYWNQFY**IIR 729
           K+        IK K  Y  E+    ++ + N L ++K+    SL  ++ +W  FY   +R
Sbjct: 272 KIESTSTTSQIKPKCNYETEITDCMEKLQSN-LSELKSSRKSSLISLKSFWLSFYKVSLR 330

Query: 730 YTIL 741
           Y  L
Sbjct: 331 YDAL 334


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 475 LSLIVFYLILFNMPIIDTGKYANYE-KLFKLKNIES 579
           L  +    ++F++PI D G Y N   KL    N+ES
Sbjct: 754 LECVFISFLIFSVPIYDWGNYLNLRGKLLSELNLES 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,352,802
Number of Sequences: 5004
Number of extensions: 72922
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 834495254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)