Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H06_e336_16.seq
         (1494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48738| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.4  
SB_21022| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  

>SB_48738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 137 YIQNKIIKKTLIIRIVKMNHLVPNXLQPGGXH*XLERPPPRGSXS 3
           +  + +I   ++  I+++ H++ N   PG     LERPPPR S +
Sbjct: 3   HFTDTLISANIVFNILEVIHVLSNSCSPGDPL-VLERPPPRWSSN 46


>SB_21022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 140 NYIQNKIIKKTLIIRI--VKMNHLVPNXLQPGGXH*XLERPPPRGSXS 3
           NYI NKII   + ++   +     V N   PG     LERPPPR S +
Sbjct: 160 NYINNKIICVAINLQFSWIDWTRRVSNSCSPGDPL-VLERPPPRWSSN 206


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,763,895
Number of Sequences: 59808
Number of extensions: 515846
Number of successful extensions: 2225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2208
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4835964124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)