Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H05_e328_15.seq
         (1464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377...    36   0.11 
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584...    35   0.14 
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    34   0.32 
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897...    32   0.99 
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787...    32   0.99 
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409...    31   3.0  
06_03_0444 + 20864183-20864436,20864831-20865818                       29   9.2  

>01_05_0619 -
           23737178-23737378,23737460-23737516,23737597-23737755,
           23739477-23739621,23739725-23740136,23740693-23740855
          Length = 378

 Score = 35.5 bits (78), Expect = 0.11
 Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 72  GRPAYDNRGK---REFDRRSGSDKTGVKPIDKREGAGPHNWGTLKDE 203
           G  A D  G+   R ++RRSG   TG     KREGAG  NWGT+ DE
Sbjct: 145 GGEAGDESGRAPHRAYERRSG---TGRGYGMKREGAGRGNWGTVTDE 188


>05_06_0189 +
           26257587-26257791,26257962-26258003,26258064-26258436,
           26258515-26258656,26259356-26259514,26259599-26259661,
           26259992-26260180
          Length = 390

 Score = 35.1 bits (77), Expect = 0.14
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 45  PRAAGNSARGRPAYDNR--GKREFDRRSGSDKTGVKPIDKREGAGPHNWGTLKDEI 206
           P   G   RG    D+    +R ++R SG+ + G +   KREG+G  NWGT  DEI
Sbjct: 152 PPFQGGGRRGGYGDDSERMSRRPYERHSGTGR-GYEM--KREGSGRGNWGTTTDEI 204


>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 33.9 bits (74), Expect = 0.32
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 57  GNSARGRPAYD-NRGKREFDRRSGSDKTGVKPIDKREGAGPHNWGTLKDE 203
           G  + G+   D  R +R ++R SG+ + G +   KREG+G  NWGT+ DE
Sbjct: 147 GGYSDGQSGDDYGRPRRAYERHSGTGR-GYEL--KREGSGRGNWGTVTDE 193


>01_06_0541 -
           30088910-30089107,30089421-30089477,30089563-30089721,
           30090639-30090777,30090863-30091247,30091612-30091816
          Length = 380

 Score = 32.3 bits (70), Expect = 0.99
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +3

Query: 99  KREFDRRSGSDKTGVKPIDKREGAGPHNWGTLKDE 203
           +R ++R SG+ + G +   KR+GAG  NWGT  DE
Sbjct: 162 RRNYERHSGTGR-GYEM--KRDGAGRGNWGTATDE 193


>01_06_0451 -
           29476892-29477516,29477600-29477843,29478313-29478714,
           29481164-29481358,29481418-29481537,29481615-29481683,
           29481901-29481999,29483857-29483946,29484049-29484180,
           29485062-29485173
          Length = 695

 Score = 32.3 bits (70), Expect = 0.99
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 39  GIPRAAGNSARGRPAYDNRGKREFDRRSGSDKTGVKPIDKREGAGP 176
           G+P + GN ARG PAY  R   E+   S S   G   +  R G+ P
Sbjct: 243 GLPPSEGN-ARGNPAYAPRHPHEYHSPSNSPGPGSAVVGSRLGSRP 287


>12_02_0370 +
           18139557-18140469,18140561-18140704,18140804-18140956,
           18141032-18141147,18141231-18141398,18142110-18142334,
           18142458-18142577
          Length = 612

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 648 EPQPEERPAVRSSAAPPKVDDSKDFPSLS*TCSEP 752
           +PQPE +PA  S   PP+   S   P+ S T  +P
Sbjct: 74  QPQPEPQPAAPSQPPPPQEQPSPPPPASSNTTQQP 108


>06_03_0444 + 20864183-20864436,20864831-20865818
          Length = 413

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 312 WVLGVRVPVADRL-QHQLPELSLQWFRLQSLS 220
           W L V  PV   + Q QLP  S +W  LQSLS
Sbjct: 350 WPLTVFFPVEMYIRQRQLPRFSAKWVALQSLS 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,409,485
Number of Sequences: 37544
Number of extensions: 454196
Number of successful extensions: 1325
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4664047416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)