Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H05_e328_15.seq
         (1464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    56   6e-08
Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical pr...    32   1.2  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    29   8.3  

>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 56.0 bits (129), Expect = 6e-08
 Identities = 37/119 (31%), Positives = 51/119 (42%)
 Frame = +3

Query: 57  GNSARGRPAYDNRGKREFDRRSGSDKTGVKPIDKREGAGPHNWGTLKDEIDEINKXXXXX 236
           G  + GR        R+FDR+SGSD+TGV+  DK++G G  NWG  KDE+    +     
Sbjct: 163 GGPSGGRGGGRGGRGRQFDRQSGSDRTGVRSFDKKDGHGKGNWGDQKDELAGETENIAPE 222

Query: 237 XXXXXKAPEAGAGDGQQXXXXXXXXXXXXXXXXXXXXYKALRNAQRTMPNYNLRKAGEG 413
                + PE    +                       +KA   A+   P +N RKAGEG
Sbjct: 223 GAESTE-PEV-PREKTAEELAYEAELAVLAKQKTLKEFKAA--AKADAPKFNTRKAGEG 277


>Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.5 protein.
          Length = 325

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 21/78 (26%), Positives = 36/78 (46%)
 Frame = -2

Query: 374 TLCISESFILIQGEFPWFFLSGCWAFGFRLLTVSSTSFRSFLFSGFAFRACLVNFIDLIF 195
           +LC +  F LI  +  +F +   W   F   TVS +   + L   F    C+  FI L+F
Sbjct: 194 SLCFAFMFALIFPQILFFVIRISW---FLYHTVSQSQATNRLQKQFFVALCIQVFIPLVF 250

Query: 194 KSPPIMRASAFTFIDWFH 141
            S P+       ++D+++
Sbjct: 251 ISIPVAYIILAVYLDYYN 268


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 185 PIMRASAFTFIDWFHASFVRTGPAVEL 105
           P + +S  TF  WF+A F  TG  VEL
Sbjct: 542 PSIFSSCSTFEQWFNAPFATTGEKVEL 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,671,717
Number of Sequences: 27780
Number of extensions: 366050
Number of successful extensions: 904
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4193891234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)