Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H05_e328_15.seq
         (1464 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17520.1 68417.m02621 nuclear RNA-binding protein, putative s...    38   0.017
At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative s...    35   0.15 
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden...    35   0.15 

>At4g17520.1 68417.m02621 nuclear RNA-binding protein, putative
           similar to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 360

 Score = 37.9 bits (84), Expect = 0.017
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +3

Query: 57  GNSARGRPAYDN-RGKREFDRRSGSDKTGVKPIDKREGAGPHNWGTLKDEIDEINK 221
           G+ + G  + D+ R ++ +DR S   +T     DKR+GAG  NWGT +D+I  + +
Sbjct: 122 GSYSNGGDSGDSERPRKNYDRHS---RTAYGNEDKRDGAGRANWGTTQDDITPVTE 174


>At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative
           similar to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 357

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 23/74 (31%), Positives = 30/74 (40%)
 Frame = +3

Query: 57  GNSARGRPAYDNRGKREFDRRSGSDKTGVKPIDKREGAGPHNWGTLKDEIDEINKXXXXX 236
           G  A G      R  R +DR S   +TG     KR G G  NWGT +D+I   ++     
Sbjct: 134 GGVANGESGDVERPPRNYDRHS---RTGHGTGMKRNGGGRGNWGTTEDDIPPTSEEPTTE 190

Query: 237 XXXXXKAPEAGAGD 278
                 A + G  D
Sbjct: 191 VEKSPVAEKQGGED 204


>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
           identical to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 355

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +3

Query: 93  RGKREFDRRSGSDKTGVKPIDKREGAGPHNWGTLKDEI 206
           R +R F+RRSG   TG     KR+G+G  NWGT  +EI
Sbjct: 146 RPRRAFERRSG---TGRGSDFKRDGSGRGNWGTPGEEI 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,611,881
Number of Sequences: 28952
Number of extensions: 339003
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3884352576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)