Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H04_e320_16.seq
         (1544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    27   5.2  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   6.9  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/75 (21%), Positives = 32/75 (42%)
 Frame = +1

Query: 430 LYENSNNITKIYQSNVGVYSQLAINKMKSLKFLMFNXXXXXXXXXXRSMPTLVSAISKKD 609
           L EN  N +++  +N  ++       +K ++  M            R+MP+ + +   KD
Sbjct: 481 LLENKENGSRLIVANCHIHWDPQFRDVKVIQVAMLMDEIAQVATKFRNMPSKIPSDQLKD 540

Query: 610 EISNYIKKNKLCIFV 654
           E   Y +  K+ I +
Sbjct: 541 ERPTYPEYLKIPILI 555


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 225 EYSYTHTYANYCHFNSEMYTFAQYHFVTDTILTLPSLKYVTNN 97
           +YS+  T  N+ +   EM     YHF       L SLK VTNN
Sbjct: 98  DYSHEITIFNFKYAQQEMQNEKLYHFAKLLEPALESLK-VTNN 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,429,458
Number of Sequences: 5004
Number of extensions: 87430
Number of successful extensions: 178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)