Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H04_e320_16.seq
         (1544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15747| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.5)             32   1.4  
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   10.0 

>SB_15747| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.5)
          Length = 167

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 436 HTTLQQNGGYIFITKKHAVICFFCYKFII*QLYSSENEFTLSLPTLVINHLLLTDNQIH 260
           HT      GY  IT    V   F  + ++   YS +  +T   PT  + H LL  +++H
Sbjct: 92  HTHYSDKTGYTRITPTRRVTHAFSRQDVLHTHYSDKTGYTRITPTRQVTHALLRQDRLH 150


>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 228 HEYSYT-HTYANYCHFNSEMYTFAQYHFVTDTILTLPSLKYVTNNKYADFYLV 73
           H  SY  +  ++Y H    M ++AQY+  +D  L      Y   N  +D++L+
Sbjct: 218 HMTSYAQYNSSSYYHLMYHMTSYAQYNSSSDYYLMYHMTSYAQYNSSSDYHLM 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,031,022
Number of Sequences: 59808
Number of extensions: 598638
Number of successful extensions: 2461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2455
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)