Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_H03_e312_15.seq
(1528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 28 3.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 5.2
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 27 6.8
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 6.8
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 9.0
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 27 9.0
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 27 9.0
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 9.0
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 532 PYYDAVGVAANARSECQRAAVQFQRASELHAAAKETVTLAEQRFVSKQDEWQFDNNWQEV 711
P Y ++G+ + RA FQ+A EL A+ E + F ++ +EW+ EV
Sbjct: 576 PAYTSLGLYYRDIHDMVRATKCFQKAFELDASQVEAAEALAKTF-AEANEWEL----VEV 630
Query: 712 LNHAIIKXMDAE-KRKAESGREH 777
++ ++ + + KRK + H
Sbjct: 631 ISRRVLNTSENDLKRKKKFNWHH 653
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.5 bits (58), Expect = 5.2
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1
Query: 319 FTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESM----KTFHLLLKETSRRL 486
F I A + + +D ++ + L +T I K +L+L + K + L+ + L
Sbjct: 115 FYIAAREGKEALVDDYLKKKFVGLIKSTTRIFKEDLQLKNHIVGYQKLYIKLVFDNLNDL 174
Query: 487 QALSKRLGACVEKSRPYYDAVGVAANARSE 576
QA+ K L + V+ + DAV N SE
Sbjct: 175 QAVRKSLMSAVKANSSQQDAVDAYTNLSSE 204
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 292 LSSTMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLKE 471
L ST++ S+ ++ D +D E KLN +I+K+ ELD + H ++K
Sbjct: 131 LLSTVDSSTNSVSRDPFSVLSIDDSALTE--KLNTINLDIDKILDELDTTRSQLHSIIKL 188
Query: 472 TSR 480
R
Sbjct: 189 PDR 191
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 293 LAVQWKNPHLLSQLTTMVILSSTLE 367
L+ +W+NP LL+QL + I S L+
Sbjct: 578 LSKKWENPQLLAQLKSRFITGSLLD 602
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/79 (22%), Positives = 33/79 (41%)
Frame = +1
Query: 379 LEKLNAATDEINKLELELDESMKTFHLLLKETSRRLQALSKRLGACVEKSRPYYDAVGVA 558
LEK+N T E L++ELD + + L+ + +L K E + V
Sbjct: 527 LEKINQLTSEKQILQVELDMLLNKENDLINDVESSQSSLDKLRNDAEENRNILSSKLKVL 586
Query: 559 ANARSECQRAAVQFQRASE 615
++ + E + + +R E
Sbjct: 587 SDLKGEKKDVSKNIERKKE 605
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 352 ELDPRIQVELEKLNAATDEINKLELELDESMKT 450
E+DPR+ E+ K T + KL++ L + +KT
Sbjct: 79 EMDPRMAAEITKRVQGTPKEKKLQVVLGDVIKT 111
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 352 ELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLKETSRRLQALSKRLGACVEKSR 531
+LD +E LN IN+L E +++ ++ LLL++ SK C R
Sbjct: 10 DLDDLRSLESSTLNKKDTAINELNPEQNDTRRSTDLLLEDKYGIQTGFSKYWKKCTYGIR 69
Query: 532 PYYDAVG 552
Y +G
Sbjct: 70 EYCKFIG 76
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 9.0
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +1
Query: 745 EKRKAESGREHQKKATAYIAAEKKVTTLEDDLKRSIXNRASTSXKEALRRTPAMXNGKIE 924
EK K S + Q + A ++ + DD R++ T LRR+ + N IE
Sbjct: 416 EKLKNASKQSIQNENKASYSSYEDSEIQNDDETRTVGTPTETISVVRLRRSSSQSN--IE 473
Query: 925 SCTVRSPT 948
VRSPT
Sbjct: 474 PNGVRSPT 481
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,246,398
Number of Sequences: 5004
Number of extensions: 73366
Number of successful extensions: 228
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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