Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_H03_e312_15.seq
(1528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 36 0.085
02_01_0642 - 4803464-4805665,4806231-4806320 35 0.20
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 33 0.60
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 31 3.2
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 30 4.2
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 30 5.6
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 35.9 bits (79), Expect = 0.085
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 21/222 (9%)
Frame = +1
Query: 367 IQVELEKLNAATDEINKLELEL----DESMKTFHLLLKETSRRLQALSKRLGACVEKS-R 531
IQ L + AAT++ ++ E ++ D + KT+ L+E ++L +L K V KS +
Sbjct: 283 IQESLTHVKAATEQAHEEEAQILAEKDVTRKTYKQALEEAEKKLSSLKKDFDPAVYKSLK 342
Query: 532 PYYDAVGVAANARSECQRAAVQFQRASELHAAAKETVTL--AEQRFVSKQDEWQFDNNWQ 705
D N + ++ RA +L + A + L A++ +E +
Sbjct: 343 EKLDET----NLEISSMQKKIEDARAQDLESIATVSTELDDAKEMLQKVAEEESSLRSLV 398
Query: 706 EVLNH---AIIKXMDAEKRK---AES--GREHQK------KATAYIAAEKKVTTLEDDLK 843
E L A+ + D K+K ES G H K + A +AAE K T+ DDL
Sbjct: 399 ESLKQELEAVKEEHDQLKQKDTETESIVGDLHVKLQKCKSELEAAVAAESKATSASDDLM 458
Query: 844 RSIXNRASTSXKEALRRTPAMXNGKIESCTVRSPTXISLLES 969
++ + S+ K AL+ M + ++L E+
Sbjct: 459 LAL-QQLSSESKNALQEAEVMQKSAADLRDEAEAARVALAEA 499
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 34.7 bits (76), Expect = 0.20
Identities = 29/133 (21%), Positives = 54/133 (40%)
Frame = +1
Query: 352 ELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLKETSRRLQALSKRLGACVEKSR 531
E D +I + L+ E+ KL+ ++ + + L+ E + Q L +E ++
Sbjct: 191 EQDKKIASSQDLLSQKVTEVEKLKQDMLKKNEEVTLMRSEIKSKEQLL-------LEANQ 243
Query: 532 PYYDAVGVAANARSECQRAAVQFQRASELHAAAKETVTLAEQRFVSKQDEWQFDNNWQEV 711
RSE +R + F R++EL A ++ + +AEQ + W +
Sbjct: 244 AAEQQEATIKELRSEIKRKEIDFSRSNELRKANEQKLKIAEQELERQNMGWLAAQKELKE 303
Query: 712 LNHAIIKXMDAEK 750
+ K MD K
Sbjct: 304 VAQLACKDMDGIK 316
>01_06_0343 +
28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 33.1 bits (72), Expect = 0.60
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 4/174 (2%)
Frame = +1
Query: 322 TIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLKETSRRL-QALS 498
T+PA +N +E+ Q L+KLN ++K + + + KE R++ Q +
Sbjct: 39 TVPAQENLSSEMKQLAQSGLDKLNERKAYVDKERAGAESELSRARAMAKELERQIEQTTA 98
Query: 499 KRLGACVEKSRPYYDAVGVAANARSECQRAAVQFQRASELHAAAKETVTL-AEQRFVSK- 672
K E + +R A + EL A KE + L E R ++
Sbjct: 99 KATSQRSELQAMWAARTRRKGTDAPGAERDARYAEVVQELDQAKKELLRLRLEVRSAAEA 158
Query: 673 QDEWQFDNNWQEVLNHAIIKXMDAEKRKA-ESGREHQKKATAYIAAEKKVTTLE 831
+ + + D + ++ +D KR+ E+ EH A I AE++ +E
Sbjct: 159 KAKAERDIVASACTIQSSLRAIDEMKRRVDEANEEHVLVELARIEAERERREIE 212
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 30.7 bits (66), Expect = 3.2
Identities = 33/160 (20%), Positives = 72/160 (45%), Gaps = 2/160 (1%)
Frame = +1
Query: 370 QVELEKLNAATDE--INKLELELDESMKTFHLLLKETSRRLQALSKRLGACVEKSRPYYD 543
Q ELEKLN +T+E + ++ E+ + L+L + RL AL K++
Sbjct: 250 QAELEKLNISTEEEHLKCMQAEMAQLSLEKQLILAQDKMRLLALEKQI------------ 297
Query: 544 AVGVAANARSECQRAAVQFQRASELHAAAKETVTLAEQRFVSKQDEWQFDNNWQEVLNHA 723
V A + +E + ++ + + + + + + QDE N Q L
Sbjct: 298 EVSKAKDTETEKVMLEKELEKIQKESTSLNDQIHSSSSMIIRLQDEIITMKNAQRRLEED 357
Query: 724 IIKXMDAEKRKAESGREHQKKATAYIAAEKKVTTLEDDLK 843
+ + +D EK+ ++ H K+ + + +KK +++++ ++
Sbjct: 358 VCRHVD-EKKTLQNELCHLKEDRSDL--DKKHSSIKEQIQ 394
>12_02_0849 -
23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 30.3 bits (65), Expect = 4.2
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +1
Query: 553 VAANARS-ECQRAAVQFQRASELHAAAKETVTLAEQRFVSK--QDEWQFDNNWQEVLNHA 723
VAA A S C + ++L + E +S+ Q +W DN+ +++L+
Sbjct: 110 VAAEAHSARCIELLLSKNARTDLKLVDGRPLVALEIALLSRRAQVKWSLDNSIEDLLSSL 169
Query: 724 IIKXMDAEKRKAESGREHQKKATAYIAAEKKVTTL 828
K ++A + AE RE + A Y A E +VT L
Sbjct: 170 QEKDLNAVRLLAEKTREVGEVAYRY-AMEGRVTVL 203
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 29.9 bits (64), Expect = 5.6
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Frame = +1
Query: 463 LKETSRRLQALSKRLGACVEKSRPYYDAVGVAANARSECQRAAVQFQRASELHAAAKETV 642
LK TS+ L+ L AC+E ++ + N S + E H E
Sbjct: 840 LKRTSQELETCRGELQACLEANKKLAREIADLQNELSNIHSSN------REGHPNVVEKF 893
Query: 643 TLAEQRFVSKQDEWQFDNNWQE--VLNHAIIKXMDAEKRKAESGREHQKKATAYIAAEKK 816
+ A ++ S E + D +QE ++N I + E ++ ++ A + EK+
Sbjct: 894 SSALNQYDSHAPEKK-DQCFQEGFMINTDDILNLQLELDIIKTILAEERTTRAEV--EKR 950
Query: 817 VTTLEDDLKRSIXNRASTSXK-EALRRTPAMXNGKIESCTVRSPTXISLLESLKXS 981
+T L+D+LK + + T + E ++R + IE+ + I+ L+ LK S
Sbjct: 951 ITCLDDELKAANIHILQTCRQSETMQRELSDARSVIEALESQQIMLINELDELKES 1006
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,966,297
Number of Sequences: 37544
Number of extensions: 566402
Number of successful extensions: 1418
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4907691684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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