Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H02_e304_16.seq
         (1512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1620 + 38697960-38698131,38698532-38700732                       32   1.0  
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587...    29   9.6  
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373...    29   9.6  

>01_06_1620 + 38697960-38698131,38698532-38700732
          Length = 790

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 50  PRAAGNSARGYIGIWYDK 103
           P A G+S+R YIGIWY+K
Sbjct: 56  PAAGGSSSRWYIGIWYNK 73


>02_05_0390 +
           28557722-28557937,28558440-28558514,28558597-28558766,
           28559046-28559124,28559320-28559516,28560300-28560387,
           28560453-28560679,28560763-28560919,28561467-28561517
          Length = 419

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 212 QSVRAYNEHCLGMSKIIYGCHASYFIQTPQ 123
           Q+++ Y EH  G + +++G HA Y I+ PQ
Sbjct: 342 QAIKGY-EHFWGGNCVLFGTHAHYQIRNPQ 370


>01_01_0513 +
           3736893-3737047,3737298-3737340,3737631-3737765,
           3737879-3738010,3738129-3738278,3738353-3738373,
           3738468-3738675,3738796-3738877,3738983-3739088,
           3739245-3739358,3739458-3739685
          Length = 457

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 742 ISVMSSS*ESQKCMILVNSIFYCN-IVIQNINLKWTNKT 629
           I++  +S E +   IL +   +C  I + NINL W N T
Sbjct: 394 INIRGTSSEQEAIKILCSQSVHCQGIYLSNINLSWENHT 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,751,261
Number of Sequences: 37544
Number of extensions: 443553
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4849681144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)