Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_H02_e304_16.seq
         (1512 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY942099-1|AAY33447.1|  108|Homo sapiens anti-rabies virus immun...    31   8.3  
AF462647-1|AAM92082.1|  105|Homo sapiens immunoglobulin light ch...    31   8.3  
AF194745-1|AAF20603.1|  108|Homo sapiens immunoglobulin lambda l...    31   8.3  
AF194743-1|AAF20601.1|  108|Homo sapiens immunoglobulin lambda l...    31   8.3  

>AY942099-1|AAY33447.1|  108|Homo sapiens anti-rabies virus
           immunoglobulin light chain variable region protein.
          Length = 108

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 14  PAVAAALXTSGIPRAAGNSARGYIGIWY-DKCLNLSVTVGFG*NMR-HGIHK*FCSSPNS 187
           PAV+ AL  +      G+S R Y   WY  K     V V +G N R  GI   F  S + 
Sbjct: 8   PAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSG 67

Query: 188 VRCMLLLTG 214
           +   L +TG
Sbjct: 68  ITASLTITG 76


>AF462647-1|AAM92082.1|  105|Homo sapiens immunoglobulin light chain
           variable region protein.
          Length = 105

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 14  PAVAAALXTSGIPRAAGNSARGYIGIWY-DKCLNLSVTVGFG*NMR-HGIHK*FCSSPNS 187
           PAV+ AL  +      G+S R Y G WY  K     V V +G N R  GI   F  S + 
Sbjct: 8   PAVSVALGQTVRITCQGDSLRSYYGSWYQQKPGQAPVLVIYGENNRPSGIPDRFSGSSSG 67

Query: 188 VRCMLLLTG 214
               L +TG
Sbjct: 68  NTASLTITG 76


>AF194745-1|AAF20603.1|  108|Homo sapiens immunoglobulin lambda
           light chain variable region protein.
          Length = 108

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 14  PAVAAALXTSGIPRAAGNSARGYIGIWY-DKCLNLSVTVGFG*NMR-HGIHK*FCSSPNS 187
           PAV+ AL  +      G+S RGY   WY  K     V V +G N R  GI   F  S + 
Sbjct: 8   PAVSVALGQTVRITCQGDSLRGYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSG 67

Query: 188 VRCMLLLTG 214
               L +TG
Sbjct: 68  NTASLTITG 76


>AF194743-1|AAF20601.1|  108|Homo sapiens immunoglobulin lambda
           light chain variable region protein.
          Length = 108

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 14  PAVAAALXTSGIPRAAGNSARGYIGIWY-DKCLNLSVTVGFG*NMR-HGIHK*FCSSPNS 187
           PAV+ AL  +      G+S RGY   WY  K     V V +G N R  GI   F  S + 
Sbjct: 8   PAVSVALGQTVRITCQGDSLRGYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSG 67

Query: 188 VRCMLLLTG 214
               L +TG
Sbjct: 68  NTASLTITG 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,549,796
Number of Sequences: 237096
Number of extensions: 2760157
Number of successful extensions: 6874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6874
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22471744940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)