Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_H01_e296_15.seq
(1581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 34 0.062
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 33 0.11
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 31 0.58
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 30 1.0
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 29 1.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 1.8
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 29 1.8
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 29 2.3
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 28 3.1
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 28 4.1
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 27 5.4
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 5.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 9.4
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 33.9 bits (74), Expect = 0.062
Identities = 24/128 (18%), Positives = 52/128 (40%)
Frame = +1
Query: 70 IRHEXADKLSTRVQGTAKQIEDLEKMAADNMQLTRDAKMKVGQANTDAREAEKQVSKGLE 249
I++E +KL G+ K + M +++ + TDA + +
Sbjct: 343 IKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKESNRTIHSQLTDAESKLSSFEQENK 402
Query: 250 DLKIIMDELQNLPTLDDAALDRLQDSLDTAEKALKTVDLDGKIKSLTEAKNDHQRWMKEY 429
LK +DE QN + D + ++ L+ A +L GK+ + ++ + +K++
Sbjct: 403 SLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSL--AHATGKLAEINSERDFQNKKIKDF 460
Query: 430 QDEHDHLK 453
+ L+
Sbjct: 461 EKIEQDLR 468
Score = 28.7 bits (61), Expect = 2.3
Identities = 23/123 (18%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Frame = +1
Query: 121 KQIEDLEKMAADNMQLTRDAKMKVGQANTDAREAEKQVSKGLEDLKIIMDELQNLPTLDD 300
K ED++++ A+ LT+D+K + Q+ T + + +S +L+ D+ N+ + ++
Sbjct: 756 KSSEDVKRLTANVETLTQDSK-AMKQSFTSLVNSYQSISNLYHELR---DDHVNMQSQNN 811
Query: 301 AALD-RLQDSLDTAEKALKTVDLDGKIKSLTEAKNDHQRWMKEYQDEHDHLKIEVENIKD 477
L+ + D + + L ++ L + + + E ++ + L ++++N++
Sbjct: 812 TLLESESKLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSELKEVNGKLSLDLKNLRS 871
Query: 478 ILN 486
LN
Sbjct: 872 SLN 874
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = +1
Query: 118 AKQIEDLEKMAADNMQLTRD-----AKMKVGQANTDAREAEKQ-VSKGLEDLKIIMDELQ 279
A ++DL++ + QLT + ++ +N +A E+ ++ L D+K + +
Sbjct: 1133 ANFVDDLKEKSDALEQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMKKSLSDSD 1192
Query: 280 NLPTLDDAALDRLQDSLDTAEK 345
N+ ++ + L R+ D LDT +K
Sbjct: 1193 NVISVIRSDLVRVNDELDTLKK 1214
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 33.1 bits (72), Expect = 0.11
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Frame = +1
Query: 73 RHEXADKLSTRVQGT-AKQIEDL-EKMAADNMQLTRDAKMKVGQANTDAREAEKQVSKGL 246
R + A K ++Q +QI DL E+ +++ R + + +AN++ + EKQ
Sbjct: 129 RKQRAAKEEQKIQEEFERQITDLLEEQQQLKLEIER-LEAETERANSETEQYEKQKEALE 187
Query: 247 EDLKIIMDE-LQNLPTLDDAALDRLQDSLDTAEKALKTVDLDGKI------KSLTEAKND 405
E+ + + +E L++ P L DA + LQD+ + E+ L D KI S+ + ++
Sbjct: 188 EEYEELRNECLKHDPQL-DAEIRTLQDTFEEVERTLTKQVSDAKIADKPLKDSMFNSNSE 246
Query: 406 HQRWMKEYQDEHDHLKIEVENIKDILNQL 492
++ M + I E I+ + QL
Sbjct: 247 KEKIMHALEKAEKDADIYSEFIQQYMEQL 275
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 30.7 bits (66), Expect = 0.58
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Frame = +1
Query: 97 STRVQGTAKQIEDLEKMAADNMQLTRDAK-MKVGQANTDAREAEKQVSKGLEDLKIIMDE 273
+T VQ + + M DN + K M N +E+ Q + + II DE
Sbjct: 191 NTHVQNSTDGVNQDTGMILDNTEDKEINKSMSYSMKNEGVKESSLQNATLINRKSIIDDE 250
Query: 274 L----------QNLPTLDDAALDRLQDSLDTAEKALKTVDLDGKIKSLTEAKNDHQRWMK 423
+ NLP L LD ++ + EK L+ VD+ K K+ + W K
Sbjct: 251 MLEIPLGKHNNTNLPALTAGFLDPVESDDEFVEKELEEVDIP-KRKNRRGQRARQAIWEK 309
Query: 424 EYQDEHDHL 450
+Y +HL
Sbjct: 310 KYGKGANHL 318
>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 64 QXIRHEXA-DKLSTRVQGTAKQIEDLEKMAADNMQLTRDAKMKVGQANTDAREAEKQVSK 240
Q IRHE A K++ + A+ +DL+ + + L + Q A+ AEK++ K
Sbjct: 208 QAIRHERAVAKIAEGIIELAQMFQDLQVLVIEQGALVDRIDFNIEQTQVHAKSAEKELIK 267
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 776 LNIFYNCLFFCKDQVSVNFKITQMFSTE 693
L+IFY+C FF K+Q ++ F I +F +E
Sbjct: 79 LSIFYDCFFFLKEQQTLKF-IIIVFQSE 105
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 1.8
Identities = 28/142 (19%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Frame = +1
Query: 79 EXADKLSTRVQGTAKQIEDLEKMAAD---NMQLTRDAKMKVGQANTDAREAE-KQVSKGL 246
+ + KL V+ + +DL++ + N+ + ++K +++ +AE + +
Sbjct: 530 QDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKI 589
Query: 247 EDLKIIMDELQNLPTLDDAALDRLQDSLDTAEKALKTVDLDGKIKSLTEAKNDHQRWMKE 426
+L +DEL+ + L S + + ++V+ D + SL KN++Q +K
Sbjct: 590 NELNSQIDELKLKLNEANKKYQELAISFENSNVKTQSVEPDNGL-SLEALKNENQTLLKN 648
Query: 427 YQDEHDHLKIEVENIKDILNQL 492
+D + ++ K++ NQL
Sbjct: 649 LEDSTARYEHLQKSFKNVFNQL 670
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/89 (26%), Positives = 39/89 (43%)
Frame = +1
Query: 55 PGLQXIRHEXADKLSTRVQGTAKQIEDLEKMAADNMQLTRDAKMKVGQANTDAREAEKQV 234
P +Q IR + + + + AK+ D+ K AAD + + ++G T + + Q
Sbjct: 138 PSIQVIRADFNNLERSHIISAAKRPRDVSKNAADAVDARIELDFRLGAIFTRLQTIQLQK 197
Query: 235 SKGLEDLKIIMDELQNLPTLDDAALDRLQ 321
S + KII PTL +DR Q
Sbjct: 198 SFDILQNKIISYGPCQFPTL-GFVVDRWQ 225
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +3
Query: 117 SETNRRFGENGGR*YAAYPRRQDEGGS----SEH*RKGGRETSIQRSRRFKDYNGRTPEL 284
+E+N N G + E GS S H R R TS +RSRRF + N E
Sbjct: 968 AESNMSSSVNSGEEVSKDNNVSQERGSQFLRSSHGRSRERSTSARRSRRFSEANSEFDEF 1027
Query: 285 AYF 293
F
Sbjct: 1028 GPF 1030
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 331 DTAEKALKTVDLDGKIKSLTEAKNDHQRWMKEYQDE 438
DT + VD+ +L +A+ ++W KE +DE
Sbjct: 240 DTWNTVVSAVDVQSSAAALAKAEEGEEQWSKEKRDE 275
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 367 DGKIKSLTEAKNDHQRWMKEYQDEHDHLKIEVENIK 474
DGKI K+D W Y+ +H H E+ +++
Sbjct: 551 DGKIVVYQREKHDEALWHVAYEQDHAHGVYEINSLE 586
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 439 VRLDIPSSIFGGHSWLPSNS*FYHPNRQFLTPS 341
++ + P F GHS++P N +HP + S
Sbjct: 211 IKFETPEQFFLGHSFVPPNFESFHPKNYLVRNS 243
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 220 AEKQVSKGLEDL-KIIMDELQNLPTLDDAALDRLQDSLDTAEKALKTVD 363
AEK ++ L+ +I+ + +N L D +L RL SLD + + T+D
Sbjct: 35 AEKLKARKLQKAAEIVQKQKENRKILKDVSLKRLSKSLDRSLPSENTID 83
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 91 KLSTRVQGTAKQIEDLEKMAADNMQLTRDAKMKVGQANTDAREAEKQVSKGLEDLK 258
+L T++Q TAK+ + ++ + + K +V QANT ++ E+LK
Sbjct: 1370 ELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAAWNEKCENLK 1425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,363,491
Number of Sequences: 5004
Number of extensions: 81978
Number of successful extensions: 233
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 891978300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -