Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G11_e375_13.seq
         (1582 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9Y0Y6 Cluster: CG1098-PA; n=3; Endopterygota|Rep: CG10...    78   7e-13
UniRef50_UPI0000E490F5 Cluster: PREDICTED: similar to Nuclear re...    58   5e-07
UniRef50_Q9UHY1 Cluster: Nuclear receptor-binding protein; n=51;...    58   6e-07
UniRef50_Q4T572 Cluster: Chromosome 14 SCAF9379, whole genome sh...    56   3e-06
UniRef50_Q91V36 Cluster: Nuclear receptor-binding protein 2; n=1...    52   3e-05
UniRef50_A7AA19 Cluster: Putative uncharacterized protein; n=1; ...    35   5.1  

>UniRef50_Q9Y0Y6 Cluster: CG1098-PA; n=3; Endopterygota|Rep:
           CG1098-PA - Drosophila melanogaster (Fruit fly)
          Length = 637

 Score = 77.8 bits (183), Expect = 7e-13
 Identities = 37/58 (63%), Positives = 46/58 (79%)
 Frame = +2

Query: 134 LLMTILLRMDDKMNRQLTCPVTRADTAAALAHELVQLGFIHEADRDKICRLMEDSLRS 307
           + MTILLRMDDKMNRQLTC V   DTAA L  ELV+LGF+H  D+DKI  L+E++L++
Sbjct: 511 ITMTILLRMDDKMNRQLTCQVNENDTAADLTSELVRLGFVHLDDQDKIQVLLEETLKA 568


>UniRef50_UPI0000E490F5 Cluster: PREDICTED: similar to Nuclear
           receptor binding protein; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to Nuclear receptor
           binding protein - Strongylocentrotus purpuratus
          Length = 458

 Score = 58.4 bits (135), Expect = 5e-07
 Identities = 24/56 (42%), Positives = 40/56 (71%)
 Frame = +2

Query: 134 LLMTILLRMDDKMNRQLTCPVTRADTAAALAHELVQLGFIHEADRDKICRLMEDSL 301
           L + +LLR+DD MNR L+C +T  ++   LA+ELVQ GFI + D+D++  ++E+ +
Sbjct: 390 LHLELLLRLDDTMNRHLSCEITAEESPRVLANELVQYGFISDFDKDRVAGIIEEKV 445


>UniRef50_Q9UHY1 Cluster: Nuclear receptor-binding protein; n=51;
           Eumetazoa|Rep: Nuclear receptor-binding protein - Homo
           sapiens (Human)
          Length = 535

 Score = 58.0 bits (134), Expect = 6e-07
 Identities = 25/54 (46%), Positives = 40/54 (74%)
 Frame = +2

Query: 140 MTILLRMDDKMNRQLTCPVTRADTAAALAHELVQLGFIHEADRDKICRLMEDSL 301
           +T+LL+++DK+NR L+C +   +    LA ELVQLGFI EAD+ ++  L+E++L
Sbjct: 462 LTLLLKLEDKLNRHLSCDLMPNENIPELAAELVQLGFISEADQSRLTSLLEETL 515


>UniRef50_Q4T572 Cluster: Chromosome 14 SCAF9379, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 14 SCAF9379, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 484

 Score = 55.6 bits (128), Expect = 3e-06
 Identities = 23/62 (37%), Positives = 43/62 (69%)
 Frame = +2

Query: 134 LLMTILLRMDDKMNRQLTCPVTRADTAAALAHELVQLGFIHEADRDKICRLMEDSLRSSF 313
           L +T+LL+++DK+NR L+C +   ++   LA ELVQLGFI E+D+ ++  ++E++    +
Sbjct: 412 LQLTLLLKLEDKLNRHLSCDLLPNESVQELAVELVQLGFISESDQPRLASVLEEAFSKFY 471

Query: 314 GQ 319
            +
Sbjct: 472 SR 473


>UniRef50_Q91V36 Cluster: Nuclear receptor-binding protein 2; n=14;
           Euteleostomi|Rep: Nuclear receptor-binding protein 2 -
           Mus musculus (Mouse)
          Length = 258

 Score = 52.4 bits (120), Expect = 3e-05
 Identities = 25/61 (40%), Positives = 38/61 (62%)
 Frame = +2

Query: 140 MTILLRMDDKMNRQLTCPVTRADTAAALAHELVQLGFIHEADRDKICRLMEDSLRSSFGQ 319
           +T+LL ++D+++RQLT  +   D+A  LA ELV  GF+HE DR K+   +E +     G 
Sbjct: 197 LTLLLVLEDRLHRQLTYDLLPTDSAQDLAAELVHYGFLHEDDRTKLAAFLETTFLKYRGT 256

Query: 320 Q 322
           Q
Sbjct: 257 Q 257


>UniRef50_A7AA19 Cluster: Putative uncharacterized protein; n=1;
           Parabacteroides merdae ATCC 43184|Rep: Putative
           uncharacterized protein - Parabacteroides merdae ATCC
           43184
          Length = 1159

 Score = 35.1 bits (77), Expect = 5.1
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 545 NEYRLQFFFTGKKXIKNIPISAVEINPLIEINSENGNISSKPDAARFP 688
           NEY      +G+     I +SA + NP + I  ENGN S   DA+  P
Sbjct: 506 NEYDNVPLGSGQNENAGILVSAAQFNPALPIRDENGNYSMNSDASFLP 553


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,627,927
Number of Sequences: 1657284
Number of extensions: 9310366
Number of successful extensions: 20669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20663
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 170183938450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)