Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G11_e375_13.seq
         (1582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45393| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.088)             45   2e-04
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)                 30   5.9  

>SB_45393| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.088)
          Length = 488

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +2

Query: 140 MTILLRMDDKMNRQLTCPVTRADTAAALAHELVQLGFIHEADR 268
           +T+ L++DDKMNRQLTC V   +    LA EL+  GF +   R
Sbjct: 306 LTVTLKLDDKMNRQLTCDVKIGENPLELADELILYGFANRNGR 348


>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
          Length = 2297

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 690  SGKRAASGLDEIFPFSEFISIRGFISTADIGI 595
            + K  +  LD  FP +E  +++GF++T D+GI
Sbjct: 1052 ASKSKSYKLDHGFPETEDATVKGFVNTPDVGI 1083


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,852,418
Number of Sequences: 59808
Number of extensions: 296564
Number of successful extensions: 743
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5176359657
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)