Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_G09_e359_13.seq
(1438 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055) 32 0.98
SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013) 32 0.98
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 32 0.98
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9) 32 1.3
SB_57086| Best HMM Match : PT (HMM E-Value=2.4) 31 1.7
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_46971| Best HMM Match : EspF (HMM E-Value=3.1) 29 6.9
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 6.9
SB_53658| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.1
SB_231| Best HMM Match : Granulin (HMM E-Value=5.4) 29 9.1
>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
Length = 685
Score = 32.3 bits (70), Expect = 0.98
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 261 TLTRSRTAPHGGTHAYARAHA--RTCTCTYVCTNMRTHVLTH*QRPPATQPHT*CRVHA 431
T TR+ T P H +A HA RT T T CTN +T T+ P Q H HA
Sbjct: 564 TRTRTYTHPDAPIHVHAPRHANVRTRTQTRKCTNTQTRKCTY--THPDIQKHVHAPRHA 620
Score = 31.9 bits (69), Expect = 1.3
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 261 TLTRSRTAPHGGTHAYARAHARTCT--CTYVCTNMRTHV 371
T T T H H YA AH T T CTY M+ HV
Sbjct: 284 TYTHPGTQMHVHAHKYANAHTHTQTRKCTYTHPGMQMHV 322
Score = 31.1 bits (67), Expect = 2.3
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Frame = +3
Query: 261 TLTRSRTAPHGGT--HAYARAHARTCT------CTYV--CTNMRTHVL-TH*QRPPATQP 407
T TR T H G H +A HA TCT CTY T M H T +R T P
Sbjct: 306 TQTRKCTYTHPGMQMHVHAPRHANTCTRTQARKCTYTHPDTQMHLHAARTQTRRCTYTHP 365
Query: 408 HT*CRVHA 431
T VHA
Sbjct: 366 VTQINVHA 373
>SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013)
Length = 269
Score = 32.3 bits (70), Expect = 0.98
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 261 TLTRSRTAPHGGTHAYARAHA--RTCTCTYVCTNMRTHVLTH*QRPPATQPHT*CRVHA 431
T TR+ T P H +A HA RT T T CTN +T T+ P Q H HA
Sbjct: 31 TRTRTYTHPDAPIHVHAPRHANVRTRTQTRKCTNTQTRKCTY--THPDIQKHVHAPRHA 87
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 32.3 bits (70), Expect = 0.98
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 246 K*KLSTLTRSRTAPHGGTHAYARAHARTCTCTYVCTNMRTHVLT 377
K + ST T++ T H THA T T T V T TH +T
Sbjct: 2036 KTETSTATKTDTLTHTKTHATTETKVSTATSTSVLTTTNTHHVT 2079
>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
Length = 231
Score = 31.9 bits (69), Expect = 1.3
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 261 TLTRSRTAPHGGTHAYARAHARTCT--CTYVCTNMRTHV 371
T T T H H YA AH T T CTY M+ HV
Sbjct: 59 TYTHPGTQMHVHAHKYANAHTHTQTRKCTYTHPGMQMHV 97
Score = 31.1 bits (67), Expect = 2.3
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Frame = +3
Query: 261 TLTRSRTAPHGGT--HAYARAHARTCT------CTYV--CTNMRTHVL-TH*QRPPATQP 407
T TR T H G H +A HA TCT CTY T M H T +R T P
Sbjct: 81 TQTRKCTYTHPGMQMHVHAPRHANTCTRTQARKCTYTHPDTQMHLHAARTQTRRCTYTHP 140
Query: 408 HT*CRVHA 431
T VHA
Sbjct: 141 VTQINVHA 148
>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
Length = 226
Score = 31.5 bits (68), Expect = 1.7
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +3
Query: 288 HGGTHAYARAHARTCTCTYVCTNMRTHVLTH*QRPPATQPHT 413
H TH Y H T T+ CT+ TH TH P T P+T
Sbjct: 149 HQYTHQYT--HQYTHQYTHQCTHPYTHQYTHPYTHPYTHPYT 188
Score = 29.1 bits (62), Expect = 9.1
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 288 HGGTHAYARAHARTCTCTYVCTNMRTHVLTH*QRPPATQPHT 413
H TH Y H T CT+ T+ TH TH P T +T
Sbjct: 153 HQYTHQYT--HQYTHQCTHPYTHQYTHPYTHPYTHPYTHQYT 192
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 30.7 bits (66), Expect = 3.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 258 STLTRSRTAPHGGTHAYARAHARTCTCTYVCTNMRTHVLTH 380
ST + + T + T +Y + TCT +Y CT TH ++
Sbjct: 136 STTSYTPTTSYTPTTSYTLTTSYTCTTSYTCTTSYTHTTSY 176
>SB_46971| Best HMM Match : EspF (HMM E-Value=3.1)
Length = 224
Score = 29.5 bits (63), Expect = 6.9
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 255 LSTLTRSRTAPHGGTHAYAR--AHARTCTCTYVCTNMRTHVLTH*QRPPATQ 404
++T TR+ A H R AH T T ++V T R+HV T + AT+
Sbjct: 113 VATRTRAHVATRTRAHVATRTRAHVATRTRSHVATRTRSHVATRTRAHVATR 164
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 29.5 bits (63), Expect = 6.9
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 285 PHGGTHAYARAHARTCTCT--YVCTNMRTHVLT 377
PHG H + HA CT ++ TN+ ++ +T
Sbjct: 832 PHGCQHCFGYGHAHNCTSASGFIATNITSNFIT 864
>SB_53658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 29.1 bits (62), Expect = 9.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 691 HDNNNNNKTLFHFDLKANTTSTRYITSR 774
HDNNNNN H D N+ + + +SR
Sbjct: 108 HDNNNNNNNNDHHDNNNNSLNHNHTSSR 135
>SB_231| Best HMM Match : Granulin (HMM E-Value=5.4)
Length = 85
Score = 29.1 bits (62), Expect = 9.1
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 649 HCTSKAYCVHRLVLHDNNNNNKTLFHFDLKANTTSTR--YITSRIVKHNYK 795
HC + C LV+ + + LFHF+ ++ + S R + ++VKH++K
Sbjct: 23 HCKAHQACQGVLVVSNQFIDTALLFHFNHRSASDSVRLTHEQVQVVKHDFK 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,588,323
Number of Sequences: 59808
Number of extensions: 504488
Number of successful extensions: 1264
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4612946361
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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