Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G09_e359_13.seq
         (1438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/PO...    29   7.5  
At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote...    29   9.9  
At1g67450.1 68414.m07677 F-box family protein contains Pfam PF00...    29   9.9  

>At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           similar to Speckle-type POZ protein (SP:O43791) [Homo
           sapiens]
          Length = 368

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 373 STCVRMFVHTYVHVHVRACARAYAC-VPPCGAVRERVKVDS 254
           S C RM+    + +H R C  +  C VP C +++ER+K  S
Sbjct: 296 SRCKRMW--QLLELHSRICVDSEQCKVPLCSSLKERMKTQS 334


>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1041

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +2

Query: 743 IQRRPAILPAES*NIITNVXGRKRARIPPGITSANSISGLXSYLQNGARADLLFGGKMQX 922
           I+RR + + AE  +++ NV  R   R+    T+ +    L  Y+ NG+  DLL GG    
Sbjct: 759 IRRRKSGVLAEV-DVLGNVRHRNIVRLLGCCTNRDCTMLLYEYMPNGSLDDLLHGGDKTM 817

Query: 923 ATTRVSNTXYQ 955
                    YQ
Sbjct: 818 TAAAEWTALYQ 828


>At1g67450.1 68414.m07677 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain; similar to
           hypothetical protein GI:7268472 from [Arabidopsis
           thaliana]
          Length = 398

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 610 LWKTYLGFSEIIYHCTSKAYCVHRLVL-HDNNNNNKTLFH 726
           +W  YLG + +I  C    +  +R  L +DNN N+K L +
Sbjct: 121 VWNPYLGQTRLI-QCRDTEHFKYRYALGYDNNRNHKILMY 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,762,887
Number of Sequences: 28952
Number of extensions: 336386
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3797605248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)