Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G08_e351_14.seq
         (1424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.18 
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               33   0.73 
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.73 
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_55712| Best HMM Match : RnaseH (HMM E-Value=0.021)                  31   3.0  
SB_6950| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 31   3.0  
SB_6342| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.8  

>SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 34.7 bits (76), Expect = 0.18
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -1

Query: 62 PAARGIH*XLERPPPRGSXS 3
          PAARGIH  LERPPPR S +
Sbjct: 14 PAARGIHYVLERPPPRWSSN 33


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 498 LHRC*KRRHIP*LNYNNIALKYTFSPKLDKYHYKEL*QLKKRC 370
           L RC KR + P + Y     KY ++PK  KY Y  +  +KK C
Sbjct: 423 LPRCGKRFYNP-MKYRCAHNKYIYNPKTHKYCYGRIIPIKKHC 464


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 32.7 bits (71), Expect = 0.73
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 498 LHRC*KRRHIP*LNYNNIALKYTFSPKLDKYHYKEL*QLKKRC 370
           L RC KR + P + Y     KY ++PK  KY Y  +  +KK C
Sbjct: 423 LPRCGKRFYNP-MKYRCAHNKYIYNPKTHKYCYGRIIPIKKHC 464



 Score = 32.7 bits (71), Expect = 0.73
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 498  LHRC*KRRHIP*LNYNNIALKYTFSPKLDKYHYKEL*QLKKRC 370
            L RC KR + P + Y     KY ++PK  KY Y  +  +KK C
Sbjct: 1205 LPRCGKRFYNP-MKYRCAHNKYIYNPKTHKYCYGRIIPIKKHC 1246


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 423 VKMYILMQYYCNLAKEYDGVFNSGAVSC 506
           +  ++ + + CNL K+Y G+ N  A+ C
Sbjct: 9   ITFFLCVHWVCNLCKDYCGIINEEAIKC 36


>SB_55712| Best HMM Match : RnaseH (HMM E-Value=0.021)
          Length = 401

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +1

Query: 694 GFVYFFSWLPSIWFXSWLHHSF---EFYNLILFLISWSGTF*XGASLFIHNS 840
           G V+   W    W  SW H +    EFY +IL L+ W         LF+ ++
Sbjct: 275 GAVFGNKWCYGTWPDSWKHRNIAILEFYPIILSLLLWGNDMSNKCILFLSDN 326


>SB_6950| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 625

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 498 LHRC*KRRHIP*LNYNNIALKYTFSPKLDKYHYKEL*QLKKRC 370
           L RC KR + P + Y     KY ++PK  KY Y  + Q  K C
Sbjct: 34  LPRCGKRFYNP-MKYRCAHNKYIYNPKTHKYCYGRIIQKGKHC 75



 Score = 29.9 bits (64), Expect = 5.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 498 LHRC*KRRHIP*LNYNNIALKYTFSPKLDKYHYKEL*QLKKRC 370
           L RC KR + P + Y     KY ++PK  KY Y  +   +K C
Sbjct: 298 LPRCGKRFYNP-MKYRCAHNKYIYNPKTHKYCYGRIINKEKHC 339



 Score = 29.5 bits (63), Expect = 6.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 498 LHRC*KRRHIP*LNYNNIALKYTFSPKLDKYHYKEL*QLKKRC 370
           L RC KR + P + Y     KY ++PK  KY Y  +   +K C
Sbjct: 122 LLRCGKRFYNP-MKYRCAHNKYIYNPKTHKYCYGRIINKEKHC 163


>SB_6342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -3

Query: 99 EEIIRSNXSCRIX--CSPGDPLV 37
          E II+S  SC+    CSPGDPLV
Sbjct: 18 EHIIKSRCSCQSSNSCSPGDPLV 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,533,572
Number of Sequences: 59808
Number of extensions: 486165
Number of successful extensions: 3389
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3376
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4565995253
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)