Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G08_e351_14.seq
         (1424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23030.1 68418.m02692 senescence-associated family protein si...    30   4.3  
At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein con...    30   4.3  
At1g47600.1 68414.m05285 glycosyl hydrolase family 1 protein con...    30   4.3  
At5g60220.1 68418.m07548 senescence-associated family protein si...    29   7.4  

>At5g23030.1 68418.m02692 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 264

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 702 LLFFVASLNLVXILASSFI*ILQSYPISYLLVWYILVXRIFIY 830
           LLFF++SL L+  L  S I I       +L +  +LV  +FI+
Sbjct: 52  LLFFISSLGLIAALYGSHIIITLYLFFLFLSILLLLVLSVFIF 94


>At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Myrosinase precursor (SP:P37702) [Arabidopsis
           thaliana]; similar to thioglucosidase (GI:871992)
           [Arabidopsis thaliana]
          Length = 511

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 479 RFQQRCSQLLCLKNCGLRFDCISNSISQINLVKSIKFGYIETIFFSLN 622
           R Q  CS L CLK C ++  C        +L+ + +FG   T+ F +N
Sbjct: 440 RIQNHCSHLSCLK-CAMKDGCNVAGYFAWSLMDNYEFGNGYTLRFGMN 486


>At1g47600.1 68414.m05285 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to thioglucosidase (GI:871992) [Arabidopsis
           thaliana]
          Length = 511

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 479 RFQQRCSQLLCLKNCGLRFDCISNSISQINLVKSIKFGYIETIFFSLN 622
           R Q  CS L CLK C ++  C        +L+ + +FG   T+ F +N
Sbjct: 440 RIQNHCSHLSCLK-CAMKDGCNVAGYFAWSLMDNYEFGNGYTLRFGMN 486


>At5g60220.1 68418.m07548 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 327

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 371 VLIKYG*REINLSYLY-IFF*I*LQLYFGALKCACKNNYGYMFFFFNIIKY 222
           +L+ +  +EI + + + I F   L L+ G + C C + + +  FFF  + Y
Sbjct: 279 ILVIFKFKEILVQFFFGIVF---LLLFNGLMVCCCNDKFAFSVFFFGYVTY 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,691,312
Number of Sequences: 28952
Number of extensions: 358633
Number of successful extensions: 456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3759050880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)