Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G06_e335_14.seq
         (1525 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X79238-1|CAA55820.1|  115|Homo sapiens ribosomal protein L30 pro...   202   3e-51
L05095-1|AAC15858.1|  115|Homo sapiens ribosomal protein L30 pro...   202   3e-51
BC095426-1|AAH95426.1|  115|Homo sapiens ribosomal protein L30 p...   202   3e-51
BC032700-1|AAH32700.1|  115|Homo sapiens ribosomal protein L30 p...   202   3e-51
AB070559-1|BAB79491.1|  115|Homo sapiens ribosomal protein L30 p...   202   3e-51
X81625-1|CAA57281.1|  437|Homo sapiens C11 protein protein.            34   1.6  
U90176-1|AAB49726.1|  437|Homo sapiens eukaryotic release factor...    34   1.6  
BT007374-1|AAP36038.1|  404|Homo sapiens eukaryotic translation ...    34   1.6  
BC088358-1|AAH88358.1|  437|Homo sapiens eukaryotic translation ...    34   1.6  
BC014269-1|AAH14269.1|  404|Homo sapiens ETF1 protein protein.         34   1.6  
AF095901-1|AAD43966.1|  437|Homo sapiens eRF1 protein.                 34   1.6  

>X79238-1|CAA55820.1|  115|Homo sapiens ribosomal protein L30
           protein.
          Length = 115

 Score =  202 bits (493), Expect = 3e-51
 Identities = 95/112 (84%), Positives = 102/112 (91%)
 Frame = +3

Query: 120 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEI 299
           MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1   MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60

Query: 300 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEAT 455
           EYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE T
Sbjct: 61  EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQT 112


>L05095-1|AAC15858.1|  115|Homo sapiens ribosomal protein L30
           protein.
          Length = 115

 Score =  202 bits (493), Expect = 3e-51
 Identities = 95/112 (84%), Positives = 102/112 (91%)
 Frame = +3

Query: 120 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEI 299
           MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1   MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60

Query: 300 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEAT 455
           EYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE T
Sbjct: 61  EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQT 112


>BC095426-1|AAH95426.1|  115|Homo sapiens ribosomal protein L30
           protein.
          Length = 115

 Score =  202 bits (493), Expect = 3e-51
 Identities = 95/112 (84%), Positives = 102/112 (91%)
 Frame = +3

Query: 120 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEI 299
           MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1   MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60

Query: 300 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEAT 455
           EYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE T
Sbjct: 61  EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQT 112


>BC032700-1|AAH32700.1|  115|Homo sapiens ribosomal protein L30
           protein.
          Length = 115

 Score =  202 bits (493), Expect = 3e-51
 Identities = 95/112 (84%), Positives = 102/112 (91%)
 Frame = +3

Query: 120 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEI 299
           MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1   MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60

Query: 300 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEAT 455
           EYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE T
Sbjct: 61  EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQT 112


>AB070559-1|BAB79491.1|  115|Homo sapiens ribosomal protein L30
           protein.
          Length = 115

 Score =  202 bits (493), Expect = 3e-51
 Identities = 95/112 (84%), Positives = 102/112 (91%)
 Frame = +3

Query: 120 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEI 299
           MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1   MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60

Query: 300 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEAT 455
           EYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE T
Sbjct: 61  EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQT 112


>X81625-1|CAA57281.1|  437|Homo sapiens C11 protein protein.
          Length = 437

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 189 SGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLR 287
           +GKYC G + TLK L  G  +++I+  N   +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330


>U90176-1|AAB49726.1|  437|Homo sapiens eukaryotic release factor 1
           protein.
          Length = 437

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 189 SGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLR 287
           +GKYC G + TLK L  G  +++I+  N   +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330


>BT007374-1|AAP36038.1|  404|Homo sapiens eukaryotic translation
           termination factor 1 protein.
          Length = 404

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 189 SGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLR 287
           +GKYC G + TLK L  G  +++I+  N   +R
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 297


>BC088358-1|AAH88358.1|  437|Homo sapiens eukaryotic translation
           termination factor 1 protein.
          Length = 437

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 189 SGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLR 287
           +GKYC G + TLK L  G  +++I+  N   +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330


>BC014269-1|AAH14269.1|  404|Homo sapiens ETF1 protein protein.
          Length = 404

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 189 SGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLR 287
           +GKYC G + TLK L  G  +++I+  N   +R
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 297


>AF095901-1|AAD43966.1|  437|Homo sapiens eRF1 protein.
          Length = 437

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 189 SGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLR 287
           +GKYC G + TLK L  G  +++I+  N   +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,839,881
Number of Sequences: 237096
Number of extensions: 3861971
Number of successful extensions: 13447
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13447
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22690981476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)