Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G06_e335_14.seq
         (1525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi...   172   4e-43
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi...   172   6e-43
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi...   170   2e-42

>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
           to GI:6984132 from [Euphorbia esula]
          Length = 112

 Score =  172 bits (419), Expect = 4e-43
 Identities = 79/109 (72%), Positives = 92/109 (84%)
 Frame = +3

Query: 120 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEI 299
           MVAAKK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 300 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 446
           EYYA+LAK GVHHY+ NN++LGTACGKY+RV  L+I DPGDSDII +LP
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109


>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
           to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
           luteus]
          Length = 112

 Score =  172 bits (418), Expect = 6e-43
 Identities = 79/109 (72%), Positives = 91/109 (83%)
 Frame = +3

Query: 120 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEI 299
           MVA KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 300 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 446
           EYYA+LAK GVH Y+GNN++LGTACGKY+RV  L+I DPGDSDII TLP
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109


>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
           to ribosomal protein L30 GI:388034 from [Homo sapiens]
          Length = 112

 Score =  170 bits (414), Expect = 2e-42
 Identities = 77/109 (70%), Positives = 91/109 (83%)
 Frame = +3

Query: 120 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEI 299
           MV  KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 300 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 446
           EYYA+LAK GVHHY+GNN++LGTACGKY+RV  L+I DPGDSDII ++P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,640,122
Number of Sequences: 28952
Number of extensions: 501935
Number of successful extensions: 1010
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4077124416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)