Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_G05_e327_13.seq
(1516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 151 1e-36
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 149 4e-36
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 138 8e-33
03_04_0141 - 17648728-17649471 33 0.59
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 31 1.8
07_03_1146 + 24343283-24344029 31 2.4
09_02_0036 + 3217163-3217584,3217752-3218322 30 4.2
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 29 7.3
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 29 7.3
08_01_0038 - 282431-283954 29 9.6
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 151 bits (366), Expect = 1e-36
Identities = 72/137 (52%), Positives = 91/137 (66%), Gaps = 3/137 (2%)
Frame = +2
Query: 80 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 259
S+FWYFLR+LKK KK+ G+I++I EI EK+P IKN+GIWLRY+SR+G HNMY+EYRD +
Sbjct: 41 SKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTT 100
Query: 260 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRV 430
+ GAV Q Y +M +RHR R IQIIK + C+R KQFH S I FPL R
Sbjct: 101 LNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRP 160
Query: 431 HQYKRLNTFAYKRPSTY 481
K TF RP+ +
Sbjct: 161 PTRKLKTTFKASRPNLF 177
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 149 bits (362), Expect = 4e-36
Identities = 70/137 (51%), Positives = 91/137 (66%), Gaps = 3/137 (2%)
Frame = +2
Query: 80 SRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLS 259
S+FWYFLR+LKK KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD +
Sbjct: 41 SKFWYFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTT 100
Query: 260 VGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRV 430
+ GAV Q Y +M +RHR R IQIIK + C+R KQFH S I FPL R
Sbjct: 101 LNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRP 160
Query: 431 HQYKRLNTFAYKRPSTY 481
K TF RP+ +
Sbjct: 161 PTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 138 bits (335), Expect = 8e-33
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 3/133 (2%)
Frame = +2
Query: 92 YFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGA 271
YFLR+LKK KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GA
Sbjct: 62 YFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 121
Query: 272 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYK 442
V Q Y +M +RHR R IQIIK + C+R KQFH I FPL R K
Sbjct: 122 VEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRK 181
Query: 443 RLNTFAYKRPSTY 481
TF RP+ +
Sbjct: 182 LKTTFKASRPNLF 194
>03_04_0141 - 17648728-17649471
Length = 247
Score = 33.1 bits (72), Expect = 0.59
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 989 GHVXAIALXTVFRPLTWSPRSLIXDSCSKLEXHSTLSRSILLIYKGFCRFR 837
GH+ AL VFR + W+PR + SC R +++K FC R
Sbjct: 21 GHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKR---VLWKEFCHAR 68
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 31.5 bits (68), Expect = 1.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -1
Query: 256 QVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPE 86
+++ F V I +L+ P+T VLNL + +F+ T+ L E L +P+ I E
Sbjct: 185 EISDFDVLIGHPIEKLIDVPETGVLNLKIEIIISFVPVLQSTNCLMEPLPIPEPIKE 241
>07_03_1146 + 24343283-24344029
Length = 248
Score = 31.1 bits (67), Expect = 2.4
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 989 GHVXAIALXTVFRPLTWSPRSLIXDSCSKLEXHSTLSRSILLIYKGFCRFR 837
GH+ AL VFR + W+PR + SC + +++ +L +K FC R
Sbjct: 21 GHLSEDALFLVFRHMNWNPRLIAVLSC-VCKWFDEVAKQVL--WKEFCHAR 68
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 4.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 594 ITIHWPSFYNVV-TGKTLALPNLIALQH 674
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 656 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 754
L+R + PF SW N +A D+ + L LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 656 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 754
L+R + PF SW N +A D+ + L LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436
>08_01_0038 - 282431-283954
Length = 507
Score = 29.1 bits (62), Expect = 9.6
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 727 FPTVAQ-PEWRMANCKR*YFVKXRVKFLLNQLIF*PIGRNRQNPL*IKRIDRDRVECXSS 903
FP++A+ P R C + Y VK R LL+QLI + R + L + D ++ S
Sbjct: 227 FPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLS 286
Query: 904 LEQE 915
++QE
Sbjct: 287 IQQE 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,855,820
Number of Sequences: 37544
Number of extensions: 715745
Number of successful extensions: 1579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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