Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_G04_e319_14.seq
(1562 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 310 2e-84
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 310 2e-84
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 309 3e-84
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 309 3e-84
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 290 2e-78
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 290 2e-78
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 288 6e-78
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 285 4e-77
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 285 4e-77
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 285 4e-77
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 310 bits (760), Expect = 2e-84
Identities = 135/225 (60%), Positives = 164/225 (72%), Gaps = 2/225 (0%)
Frame = +1
Query: 187 SRGFYFTIHSQTRLIPQCPAGTSSLWEGFSLIHIVANGKAHGQDLGAPGSCLRKFSTMPY 366
SRGF F HSQT +PQCP G S LWEG+SL+++ NG+A GQDLG PGSCL KF+TMP+
Sbjct: 1276 SRGFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPF 1335
Query: 367 MFCNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAVHS 546
MFCN+N+VC + R DYSFWLST EPM M P+ + YISRC VCE PT+ IAVHS
Sbjct: 1336 MFCNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHS 1395
Query: 547 QSNTVPTCPNGWEELWIGYSFLMHT-AGADASGQSLISPGSCLREFRNRPFIECNGLGRC 723
Q +VP CP GW +W GYSF+MHT AGA+ +GQSL SPGSCL EFR PFIEC+G G C
Sbjct: 1396 QDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTC 1455
Query: 724 NYFATAVSYWXSTIDDNKMFLKPEQKTLKADRV-TKVSRCAVCMR 855
NY+AT +W S +D +K F KP +TLKA + +VSRC VC++
Sbjct: 1456 NYYATNHGFWLSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVCLK 1500
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 310 bits (760), Expect = 2e-84
Identities = 135/225 (60%), Positives = 164/225 (72%), Gaps = 2/225 (0%)
Frame = +1
Query: 187 SRGFYFTIHSQTRLIPQCPAGTSSLWEGFSLIHIVANGKAHGQDLGAPGSCLRKFSTMPY 366
SRGF F HSQT +PQCP G S LWEG+SL+++ NG+A GQDLG PGSCL KF+TMP+
Sbjct: 1533 SRGFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPF 1592
Query: 367 MFCNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAVHS 546
MFCN+N+VC + R DYSFWLST EPM M P+ + YISRC VCE PT+ IAVHS
Sbjct: 1593 MFCNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHS 1652
Query: 547 QSNTVPTCPNGWEELWIGYSFLMHT-AGADASGQSLISPGSCLREFRNRPFIECNGLGRC 723
Q +VP CP GW +W GYSF+MHT AGA+ +GQSL SPGSCL EFR PFIEC+G G C
Sbjct: 1653 QDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTC 1712
Query: 724 NYFATAVSYWXSTIDDNKMFLKPEQKTLKADRV-TKVSRCAVCMR 855
NY+AT +W S +D +K F KP +TLKA + +VSRC VC++
Sbjct: 1713 NYYATNHGFWLSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVCLK 1757
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 309 bits (759), Expect = 3e-84
Identities = 135/225 (60%), Positives = 164/225 (72%), Gaps = 2/225 (0%)
Frame = +1
Query: 187 SRGFYFTIHSQTRLIPQCPAGTSSLWEGFSLIHIVANGKAHGQDLGAPGSCLRKFSTMPY 366
SRGF F HSQT +PQCP G S LWEG+SL+++ NG+A GQDLG PGSCL KF+TMP+
Sbjct: 1532 SRGFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPF 1591
Query: 367 MFCNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAVHS 546
MFCN+N+VC + R DYSFWLST EPM M P+ + YISRC VCE PT+ IAVHS
Sbjct: 1592 MFCNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHS 1651
Query: 547 QSNTVPTCPNGWEELWIGYSFLMHT-AGADASGQSLISPGSCLREFRNRPFIECNGLGRC 723
Q +VP CP GW +W GYSF+MHT AGA+ +GQSL SPGSCL EFR PFIEC+G G C
Sbjct: 1652 QDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTC 1711
Query: 724 NYFATAVSYWXSTIDDNKMFLKPEQKTLKADRV-TKVSRCAVCMR 855
NY+AT +W S +D +K F KP +TLKA + +VSRC VC++
Sbjct: 1712 NYYATNHGFWPSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVCLK 1756
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 309 bits (759), Expect = 3e-84
Identities = 135/225 (60%), Positives = 164/225 (72%), Gaps = 2/225 (0%)
Frame = +1
Query: 187 SRGFYFTIHSQTRLIPQCPAGTSSLWEGFSLIHIVANGKAHGQDLGAPGSCLRKFSTMPY 366
SRGF F HSQT +PQCP G S LWEG+SL+++ NG+A GQDLG PGSCL KF+TMP+
Sbjct: 87 SRGFTFAKHSQTTAVPQCPPGASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPF 146
Query: 367 MFCNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAVHS 546
MFCN+N+VC + R DYSFWLST EPM M P+ + YISRC VCE PT+ IAVHS
Sbjct: 147 MFCNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHS 206
Query: 547 QSNTVPTCPNGWEELWIGYSFLMHT-AGADASGQSLISPGSCLREFRNRPFIECNGLGRC 723
Q +VP CP GW +W GYSF+MHT AGA+ +GQSL SPGSCL EFR PFIEC+G G C
Sbjct: 207 QDTSVPQCPQGWSGMWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTC 266
Query: 724 NYFATAVSYWXSTIDDNKMFLKPEQKTLKADRV-TKVSRCAVCMR 855
NY+AT +W S +D +K F KP +TLKA + +VSRC VC++
Sbjct: 267 NYYATNHGFWPSIVDQDKQFRKPMSQTLKAGGLKDRVSRCQVCLK 311
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 290 bits (711), Expect = 2e-78
Identities = 129/229 (56%), Positives = 165/229 (72%), Gaps = 3/229 (1%)
Frame = +1
Query: 193 GFYFTIHSQTRLIPQCPAGTSSLWEGFSLIHIVANGKAHGQDLGAPGSCLRKFSTMPYMF 372
GF HSQT +P+CP G + LW+G+SL++I N K+H QDLG GSCL++FSTMP++F
Sbjct: 1531 GFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLF 1590
Query: 373 CNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAVHSQS 552
C+ NNVC++A R D S+WLST E +P M P+ R++ YISRC VCEAP TIAVHSQ+
Sbjct: 1591 CDFNNVCNYASRNDKSYWLSTSEAIP--MMPVNEREIEPYISRCAVCEAPANTIAVHSQT 1648
Query: 553 NTVPTCPNGWEELWIGYSFLMHT-AGADASGQSLISPGSCLREFRNRPFIECNGL-GRCN 726
+P CP GW LWIGYSF MHT AGA+ GQSL SPGSCL +FR PFIECNG G C+
Sbjct: 1649 IQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLEDFRATPFIECNGARGSCH 1708
Query: 727 YFATAVSYWXSTIDDNKMFLKPEQKTLKADRV-TKVSRCAVCMRQWLGQ 870
YFA S+W +TID++ F PE +TLK+ + T+VSRC VC++ G+
Sbjct: 1709 YFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGR 1757
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 290 bits (711), Expect = 2e-78
Identities = 129/229 (56%), Positives = 165/229 (72%), Gaps = 3/229 (1%)
Frame = +1
Query: 193 GFYFTIHSQTRLIPQCPAGTSSLWEGFSLIHIVANGKAHGQDLGAPGSCLRKFSTMPYMF 372
GF HSQT +P+CP G + LW+G+SL++I N K+H QDLG GSCL++FSTMP++F
Sbjct: 1532 GFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLF 1591
Query: 373 CNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAVHSQS 552
C+ NNVC++A R D S+WLST E +P M P+ R++ YISRC VCEAP TIAVHSQ+
Sbjct: 1592 CDFNNVCNYASRNDKSYWLSTSEAIP--MMPVNEREIEPYISRCAVCEAPANTIAVHSQT 1649
Query: 553 NTVPTCPNGWEELWIGYSFLMHT-AGADASGQSLISPGSCLREFRNRPFIECNGL-GRCN 726
+P CP GW LWIGYSF MHT AGA+ GQSL SPGSCL +FR PFIECNG G C+
Sbjct: 1650 IQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLEDFRATPFIECNGARGSCH 1709
Query: 727 YFATAVSYWXSTIDDNKMFLKPEQKTLKADRV-TKVSRCAVCMRQWLGQ 870
YFA S+W +TID++ F PE +TLK+ + T+VSRC VC++ G+
Sbjct: 1710 YFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGR 1758
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 288 bits (707), Expect = 6e-78
Identities = 128/229 (55%), Positives = 165/229 (72%), Gaps = 3/229 (1%)
Frame = +1
Query: 193 GFYFTIHSQTRLIPQCPAGTSSLWEGFSLIHIVANGKAHGQDLGAPGSCLRKFSTMPYMF 372
GF HSQT +P+CP G + LW+G+SL++I N K+H QDLG GSCL++FSTMP++F
Sbjct: 34 GFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLF 93
Query: 373 CNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAVHSQS 552
C+ NNVC++A R + S+WLST E +P M P+ R++ YISRC VCEAP TIAVHSQ+
Sbjct: 94 CDFNNVCNYASRNEKSYWLSTSEAIP--MMPVNEREIEPYISRCAVCEAPANTIAVHSQT 151
Query: 553 NTVPTCPNGWEELWIGYSFLMHT-AGADASGQSLISPGSCLREFRNRPFIECNGL-GRCN 726
+P CP GW LWIGYSF MHT AGA+ GQSL SPGSCL +FR PFIECNG G C+
Sbjct: 152 IQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSLSSPGSCLEDFRATPFIECNGARGSCH 211
Query: 727 YFATAVSYWXSTIDDNKMFLKPEQKTLKADRV-TKVSRCAVCMRQWLGQ 870
YFA S+W +TID++ F PE +TLK+ + T+VSRC VC++ G+
Sbjct: 212 YFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGR 260
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 285 bits (700), Expect = 4e-77
Identities = 127/229 (55%), Positives = 164/229 (71%), Gaps = 3/229 (1%)
Frame = +1
Query: 193 GFYFTIHSQTRLIPQCPAGTSSLWEGFSLIHIVANGKAHGQDLGAPGSCLRKFSTMPYMF 372
GF HSQT +P+CP G + LW+G+SL++I N K+H QDLG GSCL++FSTMP++F
Sbjct: 1532 GFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLF 1591
Query: 373 CNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAVHSQS 552
C+ NNVC++A R + S+WLST E +P M P+ R++ YISRC VCEAP TIAVHSQ+
Sbjct: 1592 CDFNNVCNYASRNEKSYWLSTSEAIP--MMPVNEREIEPYISRCAVCEAPANTIAVHSQT 1649
Query: 553 NTVPTCPNGWEELWIGYSFLMHT-AGADASGQSLISPGSCLREFRNRPFIECNGL-GRCN 726
+P CP GW LWIGYSF MHT AGA+ GQS SPGSCL +FR PFIECNG G C+
Sbjct: 1650 IQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLEDFRATPFIECNGARGSCH 1709
Query: 727 YFATAVSYWXSTIDDNKMFLKPEQKTLKADRV-TKVSRCAVCMRQWLGQ 870
YFA S+W +TID++ F PE +TLK+ + T+VSRC VC++ G+
Sbjct: 1710 YFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGR 1758
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 285 bits (700), Expect = 4e-77
Identities = 127/229 (55%), Positives = 164/229 (71%), Gaps = 3/229 (1%)
Frame = +1
Query: 193 GFYFTIHSQTRLIPQCPAGTSSLWEGFSLIHIVANGKAHGQDLGAPGSCLRKFSTMPYMF 372
GF HSQT +P+CP G + LW+G+SL++I N K+H QDLG GSCL++FSTMP++F
Sbjct: 1531 GFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLF 1590
Query: 373 CNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAVHSQS 552
C+ NNVC++A R + S+WLST E +P M P+ R++ YISRC VCEAP TIAVHSQ+
Sbjct: 1591 CDFNNVCNYASRNEKSYWLSTSEAIP--MMPVNEREIEPYISRCAVCEAPANTIAVHSQT 1648
Query: 553 NTVPTCPNGWEELWIGYSFLMHT-AGADASGQSLISPGSCLREFRNRPFIECNGL-GRCN 726
+P CP GW LWIGYSF MHT AGA+ GQS SPGSCL +FR PFIECNG G C+
Sbjct: 1649 IQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLEDFRATPFIECNGARGSCH 1708
Query: 727 YFATAVSYWXSTIDDNKMFLKPEQKTLKADRV-TKVSRCAVCMRQWLGQ 870
YFA S+W +TID++ F PE +TLK+ + T+VSRC VC++ G+
Sbjct: 1709 YFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGR 1757
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 285 bits (700), Expect = 4e-77
Identities = 127/229 (55%), Positives = 164/229 (71%), Gaps = 3/229 (1%)
Frame = +1
Query: 193 GFYFTIHSQTRLIPQCPAGTSSLWEGFSLIHIVANGKAHGQDLGAPGSCLRKFSTMPYMF 372
GF HSQT +P+CP G + LW+G+SL++I N K+H QDLG GSCL++FSTMP++F
Sbjct: 1568 GFVLVKHSQTTEVPRCPEGQTKLWDGYSLLYIEGNEKSHNQDLGHAGSCLQRFSTMPFLF 1627
Query: 373 CNLNNVCDFAQREDYSFWLSTPEPMPMAMTPIQARDVGTYISRCQVCEAPTRTIAVHSQS 552
C+ NNVC++A R + S+WLST E +P M P+ R++ YISRC VCEAP TIAVHSQ+
Sbjct: 1628 CDFNNVCNYASRNEKSYWLSTSEAIP--MMPVNEREIEPYISRCAVCEAPANTIAVHSQT 1685
Query: 553 NTVPTCPNGWEELWIGYSFLMHT-AGADASGQSLISPGSCLREFRNRPFIECNGL-GRCN 726
+P CP GW LWIGYSF MHT AGA+ GQS SPGSCL +FR PFIECNG G C+
Sbjct: 1686 IQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQSPSSPGSCLEDFRATPFIECNGARGSCH 1745
Query: 727 YFATAVSYWXSTIDDNKMFLKPEQKTLKADRV-TKVSRCAVCMRQWLGQ 870
YFA S+W +TID++ F PE +TLK+ + T+VSRC VC++ G+
Sbjct: 1746 YFANKFSFWLTTIDNDSEFKVPESQTLKSGNLRTRVSRCQVCVKSTDGR 1794
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,876,073
Number of Sequences: 27780
Number of extensions: 522109
Number of successful extensions: 1292
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4514820630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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