Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G04_e319_14.seq
         (1562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46750.1 68415.m05833 FAD-binding domain-containing protein l...    34   0.29 
At2g14920.1 68415.m01697 sulfotransferase family protein similar...    34   0.29 
At1g13430.1 68414.m01568 sulfotransferase family protein similar...    33   0.68 
At2g46740.1 68415.m05832 FAD-binding domain-containing protein s...    32   1.2  

>At2g46750.1 68415.m05833 FAD-binding domain-containing protein low
           similarity to SP|P58710 L-gulonolactone oxidase (EC
           1.1.3.8) {Mus musculus}; contains Pfam profile PF01565:
           FAD binding domain
          Length = 591

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 526 RTIAVHSQSNTVPTCPNGWEELWIGYSFLMHTAGADASGQSL-ISPGSCLRE 678
           R    +S S T   C +G E L+I   FL HT  ADA+  ++ +  G  LR+
Sbjct: 87  RVTTRYSHSITKLVCTDGTEGLFISTKFLNHTVQADATAMTMTVESGMTLRQ 138


>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420004; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 333

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 703 CNGLGRCN-YFATAVSYWXSTIDDNKMFLKPEQKTLKADRVTKVSRCA 843
           CNG+     ++  A+SYW  +++D K FL    + LKA+  T+V R A
Sbjct: 202 CNGVTLHGPFWDHALSYWRGSLEDPKHFLFMRYEDLKAEPRTQVKRLA 249


>At1g13430.1 68414.m01568 sulfotransferase family protein similar to
           steroid sulfotransferase 3 GI:3420008 from (Brassica
           napus); contains Pfam profile PF00685: Sulfotransferase
           domain
          Length = 351

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 703 CNGLGRCN-YFATAVSYWXSTIDDNKMFLKPEQKTLKADRVTKVSRCA 843
           CNG+     ++  A SYW  +++D K FL    + LKA+  T+V R A
Sbjct: 220 CNGVTLHGPFWDHAQSYWRGSLEDPKHFLFMRYEELKAEPRTQVKRLA 267


>At2g46740.1 68415.m05832 FAD-binding domain-containing protein
           strong similarity to At1g32300, At5g56490, At2g46750,
           At2g46760; contains PF01565: FAD binding domain
          Length = 590

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 550 SNTVP--TCPNGWEELWIGYSFLMHTAGADASGQSL-ISPGSCLRE 678
           S+++P  TC +G + L+I   FL HT  ADA   +L +  G  LR+
Sbjct: 97  SHSIPKLTCTDGNDGLFISTKFLNHTVQADAKAMTLTVESGVTLRQ 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,527,668
Number of Sequences: 28952
Number of extensions: 474886
Number of successful extensions: 965
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4202426112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)