Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G03_e311_13.seq
         (1629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   2.4  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    28   3.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    28   4.2  
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||...    27   7.4  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    27   9.8  

>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 498 QVIPVPQQHEEKTIVYVLSKKQDQPQDILVPQIENKPPTKPEVYFVKYKNKEDS 659
           Q  P+  Q E  + +Y  S   D P+      +   PP  P+V+F   K K DS
Sbjct: 102 QKYPLSDQVENSSNIYDPSSPPDSPRKQQT-HLGTIPPEHPDVFFHNLKKKLDS 154


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 375 FVHTAPEEPEVPTQRKPIVLPPAQKHYKIIFVKTPS 482
           F+    +  ++PTQ+KP  LPP ++      + TPS
Sbjct: 234 FLILREQSKQIPTQQKPSSLPPPERALPAPTMPTPS 269


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 186  YPSSVNIGYGSSNLASPIYSSFSSGDSLSPNYNEYQNQYLTTA 314
            + S+++ GYG   L SP YS  S G S SP Y      Y  T+
Sbjct: 1543 FSSAMSPGYG---LTSPSYSPSSPGYSTSPAYMPSSPSYSPTS 1582


>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 745 QTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQ 837
           +T + LA+    SD +  D +DP+H D+ +Q
Sbjct: 169 ETVAKLALENMDSDDIAADFTDPIHLDMESQ 199


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 381 HTAPEEPEVPTQRKPIVLPPAQKHYKIIFVKTPSESRTP-QVIPVPQQHEEKTIVYVLSK 557
           H     PE   + +   +PP     +++  ++      P +++P+ +Q  ++ I+Y +S 
Sbjct: 262 HQCVRLPEFENEHRITFIPP-DGEVELMSYRSHENINIPFRIVPIVEQLSKQKIIYRISI 320

Query: 558 KQDQPQDI 581
           + D P  +
Sbjct: 321 RADYPHKL 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,246,301
Number of Sequences: 5004
Number of extensions: 76163
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 923693084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)