Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G03_e311_13.seq
         (1629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    33   0.49 
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658...    32   1.5  
03_04_0006 + 16257288-16259522                                         32   1.5  
03_04_0118 + 17418558-17419310                                         31   2.0  
05_03_0039 - 7621613-7622695                                           31   3.4  
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    30   6.0  
02_05_0496 - 29499959-29500653,29501039-29501093                       30   6.0  

>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 33.5 bits (73), Expect = 0.49
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +3

Query: 390 PEEPEVPTQRKPIVLPPAQKHYKIIFVKTPSESRTPQVIPVPQQHEEKTIVYVLSKKQDQ 569
           P+EPE   Q++    P  Q H +      P     PQ    P Q   + +++  S++  Q
Sbjct: 143 PKEPEPEAQQQTQQPPQPQLHPQPQQPLQPQLQLHPQPQQQPSQLHPQQLLHPQSQQTPQ 202

Query: 570 PQDILVPQIENKPPTKPE 623
           PQ  + PQ +  P  +P+
Sbjct: 203 PQPQVHPQPQQPPQLQPQ 220


>10_02_0195 +
           6578384-6578629,6578710-6579300,6586302-6587512,
           6587593-6587844,6587932-6588042,6588133-6588214,
           6588299-6588382,6588464-6588658
          Length = 923

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
 Frame = +3

Query: 408 PTQRKPIVL-PPAQKHYKIIFVKTPSESRTPQVIPV------PQQHEEKTIVYVLSKKQD 566
           P    PI   PPA     I    TP  S  PQ+ PV      PQQ    +   +  +   
Sbjct: 446 PAPLVPITAAPPAPPSPPIC--TTPPGSPLPQISPVRGPSPPPQQVAPNSPTTLPRQPSP 503

Query: 567 QPQDILVPQI-ENKPPTKPEVYFVKYKNKEDSQAVIDDIVNDYNK 698
            PQ  LVP + E+ PP +P+    + K  E ++ +I  IV+ Y K
Sbjct: 504 APQSYLVPPLDEHVPPPQPDTSKEQPKTCE-ARKLIPVIVSTYTK 547


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 372 NVCILEEAAVGRNTVGTYERPSSGIGFDIHCNW 274
           N+ ++E+AAVG        R +SG   D HC+W
Sbjct: 525 NLYVMEDAAVGEFGTSKVTRLTSGAWTDTHCSW 557


>03_04_0118 + 17418558-17419310
          Length = 250

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 435 PPAQKHYKIIFVKTPSESRTPQVIPVPQQHEEKTIVYV 548
           PP+  +Y+ +++ T S+ RTPQ +PVP+   E  + Y+
Sbjct: 57  PPSDANYQKLYL-TFSKPRTPQHLPVPKLTFEDLVFYI 93


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = +3

Query: 381 HTAPEEPEVPTQRKPIVLPPAQKHYKIIFVKTPSESRTPQVIPVPQQHEEKTIVYVLSKK 560
           H +  EP+   + +P   P  +   K      P  +  P+  P P+   E    Y   K 
Sbjct: 70  HESKPEPKPEPKPEPKPYPEPKPETKPELKPEPKPNPEPKPEPKPEPKPEPK-PYPEPKP 128

Query: 561 QDQPQDILVPQIENKPPTKPE 623
           + +P+    P+ E+KP  KPE
Sbjct: 129 KPKPEPKPEPKPEHKPEPKPE 149


>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 56  GSAGNSARGGHQXRXTXQLSGGGVSGLYYPQ 148
           G AGNSA G  +   T +L GGG S    PQ
Sbjct: 24  GGAGNSAFGRGESSRTARLGGGGASLRRQPQ 54


>02_05_0496 - 29499959-29500653,29501039-29501093
          Length = 249

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 429 VLPPAQKHYKIIFVKTPSESRTPQVIPVPQQHEEKTIVYVLSKKQDQPQDILVPQIENKP 608
           V+PPA+  ++       S    PQ  P P Q ++    +   + Q QPQ    P  ++ P
Sbjct: 63  VIPPAEPPHQ------QSPEPQPQTPPPPAQQQQHGPEHEHHQAQPQPQQEPPPPAQDAP 116

Query: 609 PTKPE 623
           P +P+
Sbjct: 117 PAEPK 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,324,996
Number of Sequences: 37544
Number of extensions: 560474
Number of successful extensions: 1305
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 86
effective length of database: 11,564,564
effective search space used: 5273441184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)