Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_G03_e311_13.seq
(1629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019) 36 0.070
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.070
SB_38292| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 30 4.6
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.0
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.0
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.0
>SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019)
Length = 512
Score = 36.3 bits (80), Expect = 0.070
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 766 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
+H D +D +H D +D +H D + VH DY+ ++ D
Sbjct: 29 IHSDYTDTIHPDYTDIIHPDYTGIVHPDYTGIIHPD 64
Score = 35.1 bits (77), Expect = 0.16
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D +D +H D +D +H D + +H DY+ ++ D
Sbjct: 178 TGIIHPDYTGIIHPDYTDIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 224
Score = 33.5 bits (73), Expect = 0.49
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H +D +H D +D +H D + +H DY+ +V D
Sbjct: 10 TGIIHPDYTGIIHSGYTDIIHSDYTDTIHPDYTDIIHPDYTGIVHPD 56
Score = 32.7 bits (71), Expect = 0.86
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 742 MQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLV 864
+ +D +H D +D +H D + VH D + +H DY+ ++
Sbjct: 29 IHSDYTDTIHPDYTDIIHPDYTGIVHPDYTGIIHPDYTGII 69
Score = 32.7 bits (71), Expect = 0.86
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 218 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIYPD 264
Score = 32.7 bits (71), Expect = 0.86
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 354 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIYPD 400
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 114 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 160
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 122 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 168
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 146 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 192
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 154 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 200
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 186 TGIIHPDYTDIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 232
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 210 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 256
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 290 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 336
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 298 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 344
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 346 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 392
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 426 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 472
Score = 32.3 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 434 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 480
Score = 30.3 bits (65), Expect = 4.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H +D +H D + +H DY+ ++ D
Sbjct: 50 TGIVHPDYTGIIHPDYTGIIHSGYTDIIHPDYTGIIHPDYTDIIYPD 96
Score = 29.5 bits (63), Expect = 8.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 766 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
+H D + +H D +D ++ D + +H DY+ ++ D
Sbjct: 77 IHPDYTGIIHPDYTDIIYPDYTGIIHPDYTGIIHPD 112
Score = 29.5 bits (63), Expect = 8.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 766 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
+H D +D ++ D + +H D + +H DY+ ++ D
Sbjct: 85 IHPDYTDIIYPDYTGIIHPDYTGIIHPDYTGIIHPD 120
Score = 29.5 bits (63), Expect = 8.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 98 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 144
Score = 29.5 bits (63), Expect = 8.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 130 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 176
Score = 29.5 bits (63), Expect = 8.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 766 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
++ D +D +H D + +H D + +H DY+ ++ D
Sbjct: 269 IYPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 304
Score = 29.5 bits (63), Expect = 8.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 306 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 352
Score = 29.5 bits (63), Expect = 8.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 322 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 368
Score = 29.5 bits (63), Expect = 8.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 330 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 376
Score = 29.5 bits (63), Expect = 8.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 442 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 488
Score = 29.5 bits (63), Expect = 8.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 733 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRD 873
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 458 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 504
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 36.3 bits (80), Expect = 0.070
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +3
Query: 387 APEEPEVPTQRKPIVLPPAQKHY-KIIFVKTPSESRTPQVIPVPQQHEEKTIVYVLSKKQ 563
A E + T+R I +PPA + K+ F +S P+ P Q+ + ++Q
Sbjct: 716 AQEAEDEATKRTMIPMPPATELLEKMGFPMEEPKSEVPEPDPEQQEAYLQQQQQQAEQQQ 775
Query: 564 DQPQDILVPQIENKPPTKPEVYFVKYKNKEDSQAVIDDIVNDYNKGQGQTV 716
Q Q++ ++E P PE + KE +ID +N +G ++
Sbjct: 776 QQQQNVAKSKVEQPPEPDPEAEGSAEEPKEKKSDIIDPFQYLHNMPEGASM 826
>SB_38292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 32.3 bits (70), Expect = 1.1
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 763 AVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSXLVCRDRS 879
AV+RD S +R+ ++ V+RD S +R+ + V RDRS
Sbjct: 48 AVYRDRSHVTNRETTNAVYRDRSHVTNRETTNAVYRDRS 86
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 30.3 bits (65), Expect = 4.6
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Frame = +3
Query: 420 KPIVLPPAQKHYKIIFVKTPSESRTPQVIPVPQ-----QHEEKTIVYVLSKKQDQPQDIL 584
KP+ P + +I VK PSE P+ PV Q + EE+ + + + + + ++
Sbjct: 1634 KPVTHIPEESETEIKPVKQPSEQIEPEEEPVTQTSEESEPEEEPMTQIPEESMSEAKPVV 1693
Query: 585 ------VPQIENKPPTK----PEVYFVKYKNKE 653
P+++N T PEV VK K KE
Sbjct: 1694 HIPEESEPEVKNSKQTPEESGPEVESVKQKTKE 1726
>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 435 PPAQKHYKIIFVKTPSESRTPQVIPVPQQ 521
PPA+ YKII+ +P+E + + IPVP++
Sbjct: 142 PPAR--YKIIYTDSPAEESSLEYIPVPRR 168
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.9 bits (64), Expect = 6.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 751 PSACALLRPEKVTVCPCPLL*SLTMSSITACESSLF 644
PS C L P VT+C PL + +S + CE +F
Sbjct: 1408 PSKCKLDDPCDVTLCSHPLQKCILVSGVPRCECPMF 1443
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 29.9 bits (64), Expect = 6.0
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 846 PMNLSRKIPMNRIRKIPMNRIRK 778
P N +RK P NRIRK+ NR RK
Sbjct: 71 PHNRNRKEPGNRIRKVEHNRNRK 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,952,360
Number of Sequences: 59808
Number of extensions: 593299
Number of successful extensions: 1878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1839
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5325153864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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