Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G03_e311_13.seq
         (1629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67710.1 68414.m07727 two-component responsive regulator fami...    30   3.8  
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    30   5.0  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    29   6.6  
At5g05840.1 68418.m00642 expressed protein contains Pfam profile...    29   8.7  
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg...    29   8.7  

>At1g67710.1 68414.m07727 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver
           domain; contains similarity to response regulator
           proteins from [Arabidopsis thaliana]
          Length = 521

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +3

Query: 426 IVLPPAQKHYKIIFVKTPSESRTPQVIP---VPQQHEEKTIVYVLSKKQDQPQDILVPQI 596
           +++PP  K  +I F    S S    ++P   VP+  E K ++Y  S  Q QP       +
Sbjct: 321 VIMPPKTKKTRIGFDPPISSSAFDSLLPWNDVPEVLESKPVLYENSFLQQQPLPSQSSYV 380

Query: 597 ENKPPTKPE 623
            N  P+  E
Sbjct: 381 ANSAPSLME 389


>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245; contains Pfam profile
           PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +3

Query: 387 APEEPEVPTQRKPIVLPPAQKHYKI-IFVKTPSESRTPQVIPV--PQQHEEKTIVYVLSK 557
           AP +P      KP V PPA+   K  ++  T +  + P   PV  P     K  V   +K
Sbjct: 98  APVKPPTKPPVKPPVSPPAKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTK 157

Query: 558 KQDQPQDILVPQIENKPPTKPEV 626
              +P      +   KPPTKP V
Sbjct: 158 PPVKPPVYPPTKAPVKPPTKPPV 180


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
 Frame = +3

Query: 393 EEPEVPTQRKPIVLPPAQK--------HYKIIFVKTPSESRTPQVIPVPQQHEEKTIVYV 548
           ++P  PT   PI  PP QK          K+  VK P+   +P V P P  H+  T +Y 
Sbjct: 392 QKPPTPTYSPPIKPPPLQKPPTPTYSPPIKLPPVKPPTPIYSPPVKP-PPVHKPPTPIY- 449

Query: 549 LSKKQDQPQDILVPQIENKPPTKP 620
            S     P     P     PP KP
Sbjct: 450 -SPPVKPPPVHKPPTPTYSPPIKP 472


>At5g05840.1 68418.m00642 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620);
           expression supported by MPSS
          Length = 439

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 769 HRDLSDPVHRDLSD-PVHRDLSAQVHRDYSXLVCRDRS 879
           H D  +P+H+D+ D P+   ++  + + Y   V  DR+
Sbjct: 91  HNDYENPIHKDIKDQPLEMSMAQYIVKQYIAAVGGDRA 128


>At1g78700.1 68414.m09173 brassinosteroid signalling positive
           regulator-related contains similarity to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 325

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
 Frame = +3

Query: 183 YYPS---SVNIGYGSSNLASPIYSSFSSGDSLSPNYNEYQNQYLTTAAXXXXXXXXXXXX 353
           Y PS   S N   GSSN  SP  SSF++  S          ++L+T +            
Sbjct: 96  YQPSPCASYNPSPGSSNFMSPASSSFANLTSGDGQSLIPWLKHLSTTSSSSASSSSRLPN 155

Query: 354 XXXXXXXFVHTAPEEPEV--PTQRKPIVLPPAQKHYKIIFVKTPSESRTPQVIP 509
                   + +AP  P +  PT R P +    Q+     FV +   S T Q+IP
Sbjct: 156 YLYIPGGSI-SAPVTPPLSSPTARTPRMNTDWQQLNNSFFVSSTPPSPTRQIIP 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,031,318
Number of Sequences: 28952
Number of extensions: 431758
Number of successful extensions: 1126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,070,560
effective HSP length: 85
effective length of database: 9,609,640
effective search space used: 4391605480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)