Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G02_e303_14.seq
         (1491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    29   1.6  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    28   3.8  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    27   5.0  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +3

Query: 522 NRSGSLSRHESMAAYLP-LNKDVPNLPEYGFYPVCIPQYTSFYQSCMIIGFNSDICTKLH 698
           N      + ESM A +  +NK   N     F  VCI ++ S Y++  +I   +      H
Sbjct: 194 NEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDTH 253

Query: 699 DIIQNYEVLSIATLLLKPKSRGKVRXK 779
           +I+ N  +L   T   +  +R K++ K
Sbjct: 254 NIVVNQLLLDPNTTCPQCMARRKMQQK 280


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 540 SRHESMAAYLPLNKDVPNLPEYGFYPVCIPQ--YTSFYQSCM 659
           SR++S+  Y+  + D  NLPEY   PV I Q  Y    + C+
Sbjct: 381 SRYDSVDLYI--SNDKRNLPEYNDVPVVINQDCYDKLIKDCI 420


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 186 FVLKNAIVTKILTENNTVLGVKVIKQGKELKFFTNKEVVI 305
           +VL   I+T+ + +NN   G  VI + K L+F+   E +I
Sbjct: 196 YVLDLIIITQSIMQNNANNGTGVISRAKFLEFYVFLEQLI 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,568,944
Number of Sequences: 5004
Number of extensions: 70562
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 832513080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)