Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_G02_e303_14.seq
(1491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 58 1e-08
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 56 7e-08
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 53 5e-07
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 50 6e-06
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 49 8e-06
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 46 1e-04
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 43 5e-04
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 33 0.77
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067... 30 5.4
10_08_0110 + 14877874-14878635 30 5.4
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 58.4 bits (135), Expect = 1e-08
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 12/122 (9%)
Frame = +3
Query: 123 NNGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENNTVLGVKV-----------IKQGK 269
N+GQRH T L ++ L VL A V++IL ++ + V ++
Sbjct: 212 NSGQRH-TAADFLRHARPRGLTVLLYATVSRILFKSQDGVPYPVAYGVVFSDPLGVQHRV 270
Query: 270 ELKFFTNKEVVISAGTFNTAKLLFLSGIGPKDHLDSLGIDVVQDLP-VGDNLQDHVMILT 446
L+ EV++SAGT + +LL LSG+GP+ HL++ GI+V+ D P VG + D+ M
Sbjct: 271 YLRDGDKNEVIVSAGTLGSPQLLMLSGVGPQAHLEAHGIEVIVDQPMVGQGVADNPMNSV 330
Query: 447 YI 452
+I
Sbjct: 331 FI 332
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 56.0 bits (129), Expect = 7e-08
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 14/251 (5%)
Frame = +3
Query: 129 GQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENN----TVLGVKV--IKQGKELKFFTN 290
G+RH T LL S+ + V A V +I+ GV + G + + +
Sbjct: 205 GRRH-TAADLLRYSRPDGIDVFLRARVARIVFSRKGTKPVARGVLYHDARGGSHMAYLNH 263
Query: 291 ---KEVVISAGTFNTAKLLFLSGIGPKDHLDSLGIDVVQDLP-VGDNLQDHVMILTYIAV 458
E+++SAG + +LL LSG+GP DHL+ GI +V D P VG + D+ M Y V
Sbjct: 264 GARNEIILSAGALGSPQLLMLSGVGPADHLEEFGISLVLDHPGVGQGMSDNPMNAIY--V 321
Query: 459 DNGTCIPDESTEAMDVIR---YLYNRSGS-LSRHESMAAYLPLNKDVPNLPEYGFYPVCI 626
+ + + + + + R Y+ SGS + S AA + P+ G
Sbjct: 322 PSPSPVELSLIQVVGITRFGSYIEGASGSDWNSRTSGAAAAQVRSFGMFSPQTGQLATVP 381
Query: 627 PQYTSFYQSCMIIGFNSDICTKLHDIIQNYEVLSIATLLLKPKSRGKVRXKSTDPEEKPL 806
P+ ++ I + +++ D I +L P+S G++ ++ DP++ P
Sbjct: 382 PK----QRTPEAIARAVEAMSQVPDAALRGGF--ILEKVLGPQSTGRLALRNLDPDDNPT 435
Query: 807 IYSGXLDNPED 839
+ +P+D
Sbjct: 436 VSFNYFSHPDD 446
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 53.2 bits (122), Expect = 5e-07
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Frame = +3
Query: 129 GQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENNTVLGVKVIKQG---------KELKF 281
G+RH T LL ++ + VL A V KIL N G + + G +
Sbjct: 211 GRRH-TAADLLRYARTDGIDVLLRARVAKILF--NVRAGRRPVAHGVVFHDSEGQMHRAY 267
Query: 282 FTN---KEVVISAGTFNTAKLLFLSGIGPKDHLDSLGIDVVQDLP-VGDNLQDHVMILTY 449
+N E+++SAG + +LL LSG+GP DHL S GI +V + P VG + D+ M Y
Sbjct: 268 LSNGRGNEIILSAGAMGSPQLLMLSGVGPADHLRSFGITLVLNQPAVGQGMSDNPMNAIY 327
Query: 450 I 452
+
Sbjct: 328 V 328
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 49.6 bits (113), Expect = 6e-06
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
Frame = +3
Query: 294 EVVISAGTFNTAKLLFLSGIGPKDHLDSLGIDVVQDLP-VG----DNLQDHVMILTYIAV 458
EV++SAG+ + +LL LSGIGP + L SLGI V D+P VG DN ++ + I+ I +
Sbjct: 301 EVILSAGSLGSPQLLLLSGIGPANDLTSLGIPVFADVPDVGKHMFDNPRNGISIIPSIPI 360
Query: 459 DN 464
D+
Sbjct: 361 DH 362
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 49.2 bits (112), Expect = 8e-06
Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 12/120 (10%)
Frame = +3
Query: 129 GQRHSTLTALLNKSKKPNLFVLKNAIVTKIL--TENN----TVLGVKVIKQ--GKELKFF 284
G RH T LL NL VL +A VT+I+ TE +GV+ + G++ F
Sbjct: 227 GYRH-TAADLLAAGNHNNLRVLLHASVTRIIFNTEQEHRKPRTIGVEFKDENGGQQHAFL 285
Query: 285 T---NKEVVISAGTFNTAKLLFLSGIGPKDHLDSLGIDVV-QDLPVGDNLQDHVMILTYI 452
T + E++ISAG + +LL LSGIGP+ L I VV ++ VG + D+ M +I
Sbjct: 286 TRNRDSEIIISAGAIGSPQLLLLSGIGPRKELKKHNISVVLRNEHVGKGMSDNPMNSIFI 345
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 45.6 bits (103), Expect = 1e-04
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 7/254 (2%)
Frame = +3
Query: 129 GQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENNTVLGVKV-IKQGKELKFFTNKEVVI 305
G+RH T L ++ L V A T V ++ L+ EV++
Sbjct: 219 GRRH-TAADFLRRAHPRRLTVFLRATGTATPVAYGVVFTDPAGVRHHVYLRGGAKSEVIV 277
Query: 306 SAGTFNTAKLLFLSGIGPKDHLDSLGIDVVQDLP-VGDNLQDHVMILTYIAVDNGTCIPD 482
+AGT + +LL LSG+GP+ L+ GI V D P VG + D+ M N +P
Sbjct: 278 TAGTLGSPQLLMLSGVGPRGELEKHGILPVLDQPRVGQGVADNPM--------NSVFVPS 329
Query: 483 ESTEAMDVIRYL-YNRSGSLSRHESMAAY-LPLNKDVPN--LPEYGFYPVCIPQYTSFYQ 650
A+ +++ + +R G+ S + + +PL+ + +G + Q +
Sbjct: 330 PVPVALSLVQIVGVSRFGTFIEGVSGSQFGIPLHGRAASRRARSFGMFSPMTGQLGTVPP 389
Query: 651 SCMIIGFNSDICTKLHDIIQN-YEVLSIATLLLKPKSRGKVRXKSTDPEEKPLIYSGXLD 827
+ + + + I +L P S G V +S DP+ P +
Sbjct: 390 KERTPEAMRRAAEAMRRLDRRAFRGGFILEKILGPMSTGHVALRSADPDANPAVTFNYFR 449
Query: 828 NPEDXDPIPRLIKT 869
+P D + R I+T
Sbjct: 450 DPRDVERCVRGIET 463
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 43.2 bits (97), Expect = 5e-04
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Frame = +3
Query: 84 GKXIGVGRFSHTINNGQRHSTLTALLNKSKKPNLFVLKNAIVTKILTENNT------VLG 245
G +G F T G RH T LL NL VL +A V +I+ + G
Sbjct: 201 GTKVGGTIFDET---GYRH-TAADLLAAGDPNNLRVLLHASVNRIVFNSQRGQLKPRATG 256
Query: 246 VKVIKQGKEL-KFFTNK----EVVISAGTFNTAKLLFLSGIGPKDHLDSLGIDVV-QDLP 407
V+ + L + F N E+++SAG + +LL LSGIGPK+ L S I VV +
Sbjct: 257 VQFTDENGGLHQAFLNSNCDSEIIVSAGAIGSPQLLLLSGIGPKNDLRSHKIPVVLHNKY 316
Query: 408 VGDNLQDHVMILTYI 452
VG + D+ M +I
Sbjct: 317 VGKGMADNPMNSIFI 331
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 32.7 bits (71), Expect = 0.77
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 441 LTYIAVDNGTCIPDESTEAMDVIRYLYNRSGSLSR 545
LTY A+ NG C + A+D+I+YL +RS S++R
Sbjct: 405 LTYSALLNGYCKHSKLGPALDLIKYLRSRSISINR 439
>10_08_0586 +
19005991-19006273,19006481-19006642,19006741-19006796,
19006899-19007061,19007753-19007859,19008879-19008945,
19009176-19009375
Length = 345
Score = 29.9 bits (64), Expect = 5.4
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 303 ISAGTFNTAKLLFLSGIGPKDHLDSLGIDVVQDLPVGDNL--QDHVMILTYIAVDNG 467
++ G ++ A L + G G +D DV DLP+ D + QD ++ + I D G
Sbjct: 9 LAQGAYDGADPLDIGGFGDATGVDDAAEDVGDDLPLLDEVPAQDDLLRVVLIVADRG 65
>10_08_0110 + 14877874-14878635
Length = 253
Score = 29.9 bits (64), Expect = 5.4
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +3
Query: 369 LDSLGIDVVQDLPVGDNLQDHVMILTYIAVDNGTCIPD 482
+D++G+DV + GD + H ++L+YIA+++ +PD
Sbjct: 179 VDAMGLDVARR--GGDRARLHELLLSYIALNDRDALPD 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,266,051
Number of Sequences: 37544
Number of extensions: 404962
Number of successful extensions: 899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4768466388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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