Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G02_e303_14.seq
         (1491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18)                    30   4.1  
SB_23703| Best HMM Match : TTL (HMM E-Value=0)                         30   5.5  
SB_51790| Best HMM Match : TTL (HMM E-Value=0)                         30   5.5  

>SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18)
          Length = 354

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 384 IDVVQDLPVGDNLQDHVMILTYIAVDNGTCIPDESTEAMDVIRYLYNRSGS 536
           +DVV D+P  D L+ H   L Y+      C PD S      +  L NR+ +
Sbjct: 192 VDVVLDVPGSDILKPHRKSLVYMVHSPTYCDPDLSRGIAGTMSRLCNRTAT 242


>SB_23703| Best HMM Match : TTL (HMM E-Value=0)
          Length = 657

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 708 QNYEVLSIATLLLKPKSRGKVRXKSTDPEEKPLIYSGXLDNPEDXDPIPRL 860
           +N+ + S    L  PKS+   + KS  PEE  +  S      ED DP+P++
Sbjct: 364 KNHSLRSALKPLQIPKSKAIFQFKS-QPEESDMEQSTASSCTEDMDPVPKI 413


>SB_51790| Best HMM Match : TTL (HMM E-Value=0)
          Length = 536

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 708 QNYEVLSIATLLLKPKSRGKVRXKSTDPEEKPLIYSGXLDNPEDXDPIPRL 860
           +N+ + S    L  PKS+   + KS  PEE  +  S      ED DP+P++
Sbjct: 364 KNHSLRSALKPLQIPKSKAIFQFKS-QPEESDMEQSTASSCTEDMDPVPKI 413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,324,497
Number of Sequences: 59808
Number of extensions: 501627
Number of successful extensions: 1254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4824226347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)