Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G02_e303_14.seq
         (1491 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    87   2e-16
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    87   2e-16

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 87.0 bits (206), Expect = 2e-16
 Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
 Frame = +3

Query: 96  GVGRFSHTINNGQRHSTLTALLNKS-KKPNLFVLKNAIVTKILTENNTVLGVKVIKQGKE 272
           G G    TI+ G+R S   A L+ +  + NL      +V+++L E    +GV+ +K G+ 
Sbjct: 224 GFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQS 283

Query: 273 LKFFTNKEVVISAGTFNTAKLLFLSGIGPKDHLDSLGIDVVQDLP-VGDNLQDHVMI 440
            + + +KEV++S G  N+ +LL LSGIG  D L  LGI VV  LP VG NLQDH+ I
Sbjct: 284 HRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEI 340


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 87.0 bits (206), Expect = 2e-16
 Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
 Frame = +3

Query: 96  GVGRFSHTINNGQRHSTLTALLNKS-KKPNLFVLKNAIVTKILTENNTVLGVKVIKQGKE 272
           G G    TI+ G+R S   A L+ +  + NL      +V+++L E    +GV+ +K G+ 
Sbjct: 112 GFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQS 171

Query: 273 LKFFTNKEVVISAGTFNTAKLLFLSGIGPKDHLDSLGIDVVQDLP-VGDNLQDHVMI 440
            + + +KEV++S G  N+ +LL LSGIG  D L  LGI VV  LP VG NLQDH+ I
Sbjct: 172 HRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEI 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,211,061
Number of Sequences: 237096
Number of extensions: 2471735
Number of successful extensions: 4665
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4663
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22088081002
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)