Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_G02_e303_14.seq
         (1491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    77   2e-14
Z32682-4|CAA83612.1|  218|Caenorhabditis elegans Hypothetical pr...    29   6.4  
AC024696-12|AAK84511.1|  316|Caenorhabditis elegans Hypothetical...    29   6.4  
AC006697-2|AAF60391.1|  316|Caenorhabditis elegans Hypothetical ...    29   6.4  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 13/131 (9%)
 Frame = +3

Query: 87  KXIGVGRFSHTINNGQRHSTLTALLNKSK-KPNLFVLKNAIVTKILTENNTVLGVKVIKQ 263
           K  G+     TI+NG+R S   A ++  + +PNL        T++L + N  +G++ I++
Sbjct: 216 KQEGISTMDMTIHNGERWSASKAYVHPIRNRPNLITSSGITCTRVLFDTNKAIGIEFIRK 275

Query: 264 ----GKEL-------KFFTNKEVVISAGTFNTAKLLFLSGIGPKDHLDSLGIDVVQDLP- 407
               G +        K +   +V+++ G  NT +LL LSG+GP DHL S  I +V +LP 
Sbjct: 276 LNFVGTDSIDSYSREKIYCQGDVILAGGAINTPQLLMLSGVGPADHLRSHEIPIVANLPG 335

Query: 408 VGDNLQDHVMI 440
           VG NLQDH+ I
Sbjct: 336 VGQNLQDHLEI 346


>Z32682-4|CAA83612.1|  218|Caenorhabditis elegans Hypothetical
           protein M04D8.4 protein.
          Length = 218

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 390 VVQDLPVGDNLQDHVMILTYIAV 458
           V +D+PV D + D ++IL YIAV
Sbjct: 75  VQKDIPVSDRVTDKIVILCYIAV 97


>AC024696-12|AAK84511.1|  316|Caenorhabditis elegans Hypothetical
           protein F07B7.2 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 624 CKQDRSHIQVNLAHLCSRVNKQPCFHV 544
           CK+DR  ++V+L ++ +R  +  CF V
Sbjct: 142 CKRDREDVRVSLENIINRCTRNTCFSV 168


>AC006697-2|AAF60391.1|  316|Caenorhabditis elegans Hypothetical
           protein W09B7.2 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 624 CKQDRSHIQVNLAHLCSRVNKQPCFHV 544
           CK+DR  ++V+L ++ +R  +  CF V
Sbjct: 142 CKRDREDVRVSLENIINRCTRNTCFSV 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,640,544
Number of Sequences: 27780
Number of extensions: 386602
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4287551336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)